Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   IGB11_RS09480 Genome accession   NZ_CP062071
Coordinates   1912245..1913075 (-) Length   276 a.a.
NCBI ID   WP_003709392.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain ZLp4b     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1907245..1918075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGB11_RS09460 (IGB11_09470) - 1908375..1909331 (+) 957 WP_192044528.1 DhaKLM operon coactivator DhaQ -
  IGB11_RS09465 (IGB11_09475) dhaS 1909332..1909856 (-) 525 WP_003704309.1 dihydroxyacetone kinase transcriptional activator DhaS -
  IGB11_RS09470 (IGB11_09480) brnQ 1910002..1911384 (-) 1383 WP_069468887.1 branched-chain amino acid transport system II carrier protein -
  IGB11_RS09475 (IGB11_09485) - 1911924..1912190 (+) 267 WP_003701014.1 hypothetical protein -
  IGB11_RS09480 (IGB11_09490) endA 1912245..1913075 (-) 831 WP_003709392.1 DNA/RNA non-specific endonuclease Machinery gene
  IGB11_RS09485 (IGB11_09495) - 1913444..1914046 (+) 603 WP_081512819.1 nitroreductase family protein -
  IGB11_RS09490 (IGB11_09500) - 1914105..1916036 (-) 1932 WP_095758777.1 heavy metal translocating P-type ATPase -
  IGB11_RS09495 (IGB11_09505) - 1916159..1916500 (+) 342 WP_003701009.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30410.73 Da        Isoelectric Point: 10.4970

>NTDB_id=486049 IGB11_RS09480 WP_003709392.1 1912245..1913075(-) (endA) [Ligilactobacillus salivarius strain ZLp4b]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=486049 IGB11_RS09480 WP_003709392.1 1912245..1913075(-) (endA) [Ligilactobacillus salivarius strain ZLp4b]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAGTTTATGAGATGGTTAGCTACCGTAGCAGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACTGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGGCAGGTACAAAACTTGCCTGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCTCTTGTGGGAAATGTTAGAGGATTTGATGCTTCTGAGTCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCGGCTTCTAAGGATTCTACCGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489