Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   IGB11_RS05350 Genome accession   NZ_CP062071
Coordinates   1046199..1047041 (+) Length   280 a.a.
NCBI ID   WP_095758541.1    Uniprot ID   A0A9X6S5K5
Organism   Ligilactobacillus salivarius strain ZLp4b     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1041199..1052041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGB11_RS05290 (IGB11_05300) - 1041391..1041690 (+) 300 WP_095758546.1 hypothetical protein -
  IGB11_RS05295 (IGB11_05305) - 1042004..1042210 (+) 207 WP_003699206.1 hypothetical protein -
  IGB11_RS05300 (IGB11_05310) - 1042230..1042538 (+) 309 WP_003699205.1 hypothetical protein -
  IGB11_RS05305 (IGB11_05315) - 1042531..1043433 (+) 903 WP_095758545.1 hypothetical protein -
  IGB11_RS05310 (IGB11_05320) - 1043507..1043818 (+) 312 WP_192044364.1 hypothetical protein -
  IGB11_RS05315 (IGB11_05325) - 1043835..1044014 (+) 180 WP_003699202.1 hypothetical protein -
  IGB11_RS05320 (IGB11_05330) - 1044007..1044177 (+) 171 WP_003699201.1 hypothetical protein -
  IGB11_RS05325 (IGB11_05335) - 1044204..1044485 (+) 282 WP_003699200.1 hypothetical protein -
  IGB11_RS05330 (IGB11_05340) - 1044524..1044730 (+) 207 WP_003699199.1 hypothetical protein -
  IGB11_RS05335 (IGB11_05345) - 1044733..1044954 (+) 222 WP_003699198.1 hypothetical protein -
  IGB11_RS05340 (IGB11_05350) - 1044954..1045709 (+) 756 WP_095758543.1 hypothetical protein -
  IGB11_RS05345 (IGB11_05355) - 1045746..1046186 (+) 441 WP_095758542.1 single-stranded DNA-binding protein -
  IGB11_RS05350 (IGB11_05360) endA 1046199..1047041 (+) 843 WP_095758541.1 DNA/RNA non-specific endonuclease Machinery gene
  IGB11_RS05355 (IGB11_05365) - 1047153..1048181 (+) 1029 WP_095758540.1 ParM/StbA family protein -
  IGB11_RS05360 (IGB11_05370) - 1048196..1048486 (+) 291 WP_095758539.1 hypothetical protein -
  IGB11_RS05365 (IGB11_05375) - 1048732..1049046 (+) 315 WP_003699191.1 DUF5592 family protein -
  IGB11_RS05370 (IGB11_05380) - 1049052..1049654 (+) 603 WP_003699189.1 hypothetical protein -
  IGB11_RS05375 (IGB11_05385) - 1049666..1051611 (+) 1946 Protein_1021 virulence factor -
  IGB11_RS05380 (IGB11_05390) - 1051608..1051826 (+) 219 WP_095758538.1 hypothetical protein -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 30392.06 Da        Isoelectric Point: 10.4624

>NTDB_id=486039 IGB11_RS05350 WP_095758541.1 1046199..1047041(+) (endA) [Ligilactobacillus salivarius strain ZLp4b]
MKIGKLLVVGALATALSGCSQPVNDNYVTTANHTKISKIIKSKLTAKNKQNVSDTPSKQLASSVLSENVVSNLGGKNSLK
FNGHGAFIVNDNHTSLNAKVNAAPYAQNQVDNLGRATVGNALLNKTSRQYRNRQEIGNGATNWKPAGFKQILHLSGKYNH
AYDRGHLLGYALVGNVRGFDASESNKANITTQTAWANEARESNSTGQNYYEGLVRKALDKNKTVRYRVTNLYTGNNVVPS
GTHLEAKSKDGSLEFNVFVPNVQNGILIDYQTGNVTVQKR

Nucleotide


Download         Length: 843 bp        

>NTDB_id=486039 IGB11_RS05350 WP_095758541.1 1046199..1047041(+) (endA) [Ligilactobacillus salivarius strain ZLp4b]
ATGAAGATTGGTAAATTATTGGTAGTAGGAGCTTTAGCAACTGCTTTATCAGGTTGTAGTCAACCAGTAAATGATAATTA
TGTTACTACAGCTAATCATACGAAAATAAGCAAAATTATTAAATCAAAGCTAACAGCTAAAAATAAGCAAAATGTTAGTG
ACACACCGTCAAAGCAATTAGCTAGTTCTGTTTTAAGTGAAAATGTTGTAAGTAATCTAGGTGGGAAAAATAGTTTGAAA
TTTAACGGTCATGGAGCTTTCATTGTAAATGATAATCATACTAGCCTAAATGCTAAAGTTAATGCAGCTCCTTATGCTCA
AAATCAAGTCGATAATTTAGGTAGAGCAACTGTTGGAAATGCCCTATTAAATAAAACGAGTCGTCAATATCGTAATCGAC
AAGAAATAGGTAATGGAGCAACTAATTGGAAACCTGCAGGGTTTAAACAGATTCTGCACCTTAGTGGAAAGTACAATCAT
GCTTACGATAGAGGACATTTATTAGGTTATGCTTTAGTAGGTAATGTTAGAGGTTTTGACGCTTCGGAATCTAATAAAGC
AAATATTACTACTCAAACAGCATGGGCAAATGAGGCTAGAGAGTCTAATTCAACTGGGCAAAATTACTATGAAGGATTAG
TCAGGAAAGCCTTAGATAAAAATAAAACAGTACGTTATCGAGTAACTAACCTTTATACAGGAAATAATGTAGTTCCTTCT
GGAACACATTTAGAAGCAAAGTCTAAAGACGGATCGCTAGAGTTTAATGTGTTTGTACCTAACGTACAAAATGGAATCTT
AATTGATTATCAAACTGGTAATGTAACGGTTCAAAAAAGGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(90-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

58.798

83.214

0.489
  endA Streptococcus pneumoniae D39

58.798

83.214

0.489
  endA Streptococcus pneumoniae R6

58.798

83.214

0.489
  endA Streptococcus pneumoniae TIGR4

58.798

83.214

0.489