Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I872_RS09470 Genome accession   NC_021175
Coordinates   1918166..1919434 (+) Length   422 a.a.
NCBI ID   WP_015605871.1    Uniprot ID   A0ABN4B8Q3
Organism   Streptococcus cristatus AS 1.3089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1913166..1924434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS09450 (I872_09465) - 1914167..1914637 (-) 471 WP_015605867.1 GNAT family N-acetyltransferase -
  I872_RS09455 (I872_09470) - 1914634..1915074 (-) 441 WP_041826920.1 NUDIX hydrolase -
  I872_RS09460 (I872_09475) - 1915283..1917289 (-) 2007 WP_015605869.1 hypothetical protein -
  I872_RS09465 (I872_09480) - 1917608..1918078 (-) 471 WP_015605870.1 DUF3013 family protein -
  I872_RS09470 (I872_09485) rarA 1918166..1919434 (+) 1269 WP_015605871.1 replication-associated recombination protein A Machinery gene
  I872_RS09480 (I872_09490) - 1919859..1920998 (-) 1140 WP_015605872.1 site-specific integrase -
  I872_RS09485 (I872_09495) - 1921000..1921188 (-) 189 WP_002903611.1 DUF3173 domain-containing protein -
  I872_RS09490 (I872_09500) - 1921200..1922177 (-) 978 WP_015605873.1 replication initiator protein -
  I872_RS11170 - 1922224..1922406 (-) 183 WP_080551212.1 hypothetical protein -
  I872_RS09495 (I872_09505) - 1922613..1923125 (+) 513 WP_003013606.1 helix-turn-helix domain-containing protein -
  I872_RS09500 (I872_09510) - 1923343..1923858 (+) 516 WP_003004261.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46659.26 Da        Isoelectric Point: 6.2514

>NTDB_id=48569 I872_RS09470 WP_015605871.1 1918166..1919434(+) (rarA) [Streptococcus cristatus AS 1.3089]
MPENLALRMRPTSIDQIIGQQHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNDDIRTAIQ
LALTNKERGFDFPVELDDEALDFIAISTNGDLRSAYNSLDLAVLSTPEDGKGIRHITLDVMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLIVIAYEDIGLANPDAQVHTVTALEAAQRIGFPEARILIANIV
IDLALSPKSNSAYLAMDKALADLRKNGNLPIPRHLRDSHYAGSKELGNAQDYLYPHSYPGNWVKQDYLPNKIKDANYFTP
NENGKYERALGMTKDKIDDLKK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=48569 I872_RS09470 WP_015605871.1 1918166..1919434(+) (rarA) [Streptococcus cristatus AS 1.3089]
ATGCCAGAAAACCTCGCCCTACGCATGAGACCGACCAGTATTGACCAGATCATCGGCCAGCAGCATCTGGTCGGACCTGG
GAAAATCATCCGCCGCATGGTTGAAGCCAACCGCCTGTCCTCGATGATTCTCTACGGGCCACCCGGCATCGGTAAAACCT
CTATCGCCTCGGCTATTGCCGGCACAACCAAATATGCCTTTCGGACCTTTAACGCCACCGTAGATAGCAAGAAGCGCCTG
CAGGAAATCGCTGAAGAAGCGAAATTTTCCGGCGGACTGGTGCTCCTGCTGGACGAGATTCACCGCTTGGACAAGACCAA
GCAAGACTTCCTGCTGCCGCTATTAGAAAGCGGTCTGGTCATCATGATTGGAGCGACGACAGAAAATCCTTTCTTTTCTG
TCACCCCTGCTATTCGAAGCCGGGTTCAGATATTTGAACTTGAGCCCCTCAGCAACGACGACATCCGGACAGCCATTCAG
CTAGCCTTGACGAATAAGGAACGAGGATTTGATTTCCCAGTGGAGCTAGACGATGAAGCTCTAGACTTCATTGCTATCTC
TACCAACGGAGACCTGCGCTCCGCCTATAACTCGCTGGACCTAGCCGTACTCTCTACCCCAGAAGATGGCAAGGGCATCC
GCCACATCACGCTCGATGTCATGGAAAACAGCCTGCAAAAGAGCTATATCACCATGGATAAGGACGGAGACGGCCATTAC
GATGTCCTCTCTGCCCTGCAGAAGTCCATCCGTGGCTCCGATGTCAATGCCAGCCTCCACTACGCAGCTCGGCTCGTTGA
GGCAGGAGACCTCCCTAGCCTAGCTAGACGCCTGATCGTTATCGCTTACGAAGATATTGGCCTGGCAAATCCAGACGCTC
AAGTTCATACCGTCACAGCTCTGGAAGCAGCCCAACGAATCGGCTTTCCTGAAGCCCGGATCCTCATTGCTAATATTGTC
ATTGACTTGGCTCTATCCCCCAAATCCAACTCAGCCTATCTGGCCATGGACAAGGCCTTAGCTGACTTACGAAAGAATGG
AAATCTGCCCATCCCCCGCCACTTACGAGATAGCCACTATGCCGGCAGTAAGGAACTGGGCAACGCACAGGACTATCTCT
ACCCTCACTCCTATCCTGGCAATTGGGTCAAGCAGGACTATCTGCCCAACAAGATAAAAGACGCCAATTATTTCACTCCT
AATGAGAATGGCAAATACGAGCGAGCCCTTGGAATGACCAAGGATAAGATTGATGACTTAAAAAAATGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.662

98.104

0.585

Multiple sequence alignment