Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I872_RS08975 Genome accession   NC_021175
Coordinates   1816455..1817243 (-) Length   262 a.a.
NCBI ID   WP_015605780.1    Uniprot ID   A0ABN4B7A6
Organism   Streptococcus cristatus AS 1.3089     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1811455..1822243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS08955 (I872_08970) gatA 1811882..1813348 (-) 1467 WP_015605777.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  I872_RS08960 (I872_08975) gatC 1813348..1813650 (-) 303 WP_005591696.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  I872_RS08965 (I872_08980) aspS 1813851..1815587 (-) 1737 WP_015605778.1 aspartate--tRNA ligase -
  I872_RS08970 (I872_08985) - 1815898..1816455 (-) 558 WP_015605779.1 cysteine hydrolase family protein -
  I872_RS08975 (I872_08990) codY 1816455..1817243 (-) 789 WP_015605780.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I872_RS08980 (I872_08995) - 1817465..1818679 (-) 1215 WP_015605781.1 pyridoxal phosphate-dependent aminotransferase -
  I872_RS08985 (I872_09000) - 1818936..1819391 (+) 456 WP_015605782.1 universal stress protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29667.08 Da        Isoelectric Point: 5.4813

>NTDB_id=48565 I872_RS08975 WP_015605780.1 1816455..1817243(-) (codY) [Streptococcus cristatus AS 1.3089]
MANLLEKTRKITSILKRSEEQLQEELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNNDRVEAFFQDKTFPKGYV
QEANMVYETEANLPVTHDLTIFPVETKDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKEFLDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=48565 I872_RS08975 WP_015605780.1 1816455..1817243(-) (codY) [Streptococcus cristatus AS 1.3089]
ATGGCAAACCTATTAGAAAAAACAAGGAAAATTACTTCTATCTTGAAACGTTCAGAAGAGCAGCTTCAAGAGGAACTTCC
TTACAATGCGATTACTCGCCAGCTTGCTGACATTATTCACTGTAATGCCTGCATCATCAACAGCAAGGGCCGTCTTTTGG
GCTACTTTATGCGCTACAAGACAAATAATGATCGTGTAGAAGCCTTTTTCCAAGACAAGACTTTCCCTAAAGGATACGTC
CAAGAAGCGAACATGGTCTATGAGACAGAGGCCAATCTGCCTGTCACGCATGATTTGACCATTTTTCCTGTGGAAACTAA
GGATGACTTTCCAGATGGCCTGACCACTATCGCGCCGATTCATGTTTCAGGGATTCGCTTGGGCTCATTGATTATCTGGC
GCAATGATAAAGAATTTTTGGATGACGATTTGATTTTGGTCGAGATTGCCAGCACAGTGGTCGGTATTCAGCTGCTTAAC
TTCCAGCGGGAAGAAGATGAGAAGAACATCCGCCGCCGGACAGCTGTGACTATGGCGGTCAATACTCTGTCTTACTCAGA
GCTAAGAGCTGTTTCAGCTATTCTGGGAGAGCTCAATGGCAATGAAGGGCAACTGACGGCTTCTGTCATTGCCGACCGCA
TCGGGATTACCCGCTCAGTTATTGTCAATGCTTTGCGTAAGCTGGAAAGTGCGGGAATTATTGAAAGCCGCTCGCTGGGA
ATGAAAGGGACTTATCTGAAAGTCCTGATTCCAGATGTTTTTGAGGAAATTAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473

Multiple sequence alignment