Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I872_RS08795 Genome accession   NC_021175
Coordinates   1778213..1780597 (+) Length   794 a.a.
NCBI ID   WP_015605749.1    Uniprot ID   A0ABM5NLY5
Organism   Streptococcus cristatus AS 1.3089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1773213..1785597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS08770 (I872_08790) comA 1773413..1775566 (-) 2154 WP_015605745.1 peptide cleavage/export ABC transporter ComA Regulator
  I872_RS08775 (I872_08795) - 1775922..1776149 (-) 228 WP_231913924.1 hypothetical protein -
  I872_RS08780 - 1776218..1776391 (-) 174 WP_041826837.1 Blp family class II bacteriocin -
  I872_RS08785 (I872_08800) rnhC 1776616..1777500 (+) 885 WP_015605747.1 ribonuclease HIII -
  I872_RS08790 (I872_08805) lepB 1777504..1778136 (+) 633 WP_015605748.1 signal peptidase I -
  I872_RS08795 (I872_08810) recD/recD2/recDB 1778213..1780597 (+) 2385 WP_015605749.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I872_RS08800 (I872_08815) dinB 1780740..1781804 (-) 1065 WP_015605750.1 DNA polymerase IV -
  I872_RS08805 (I872_08820) pflB 1782159..1784474 (+) 2316 WP_015605751.1 formate C-acetyltransferase -
  I872_RS08810 (I872_08825) - 1784592..1785365 (+) 774 WP_015605752.1 threonine/serine exporter family protein -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 89210.02 Da        Isoelectric Point: 4.5514

>NTDB_id=48564 I872_RS08795 WP_015605749.1 1778213..1780597(+) (recD/recD2/recDB) [Streptococcus cristatus AS 1.3089]
MTEFYFSGTIERIIFENPSNFFRILLLDIQDTDCEDFDDFEIIVTGTMADVIEGEDYTFWGNLVQHPKYGQQLKISRYER
AKPTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGEETIDKILAEPEKLKEITGLSAKNREAFVAKLQLNYGTELVLAKLAA
YGIPNKLAFQIQETYKEETLEVVEHYPYQLVEDIQGIGFKIADQLAQQLGIESDAPERFRAGLIHTLLTQSMETGDTYLE
ARDLLAHTIELLESSRQVELDPSLVANELAHLIEEDKVQNVETKIFENSLFFAEEGIRSNLVRLLEKGHQDRFEEEKILG
AISQAEDELGIHYDGIQKQAIFDAITQKVFILTGGPGTGKTTVINGIIAVYSQLRGLDLKKKADLPILLAAPTGRAARRM
NELTGLPSATIHRHLGMTGDDDSSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNTKLLLVGDAEQLPSVSPGQVLA
DLLQIPSIPQTKLEKIYRQSQDSTIVTLASQIQKGLLPADFTEKKADRSYFEARNEHISPMIERITSAAIRSGIPAQDVQ
VLAPMYRGQAGIDQINSLMQNLINPVEKDQLTFEAPDCQYRQGDRVIHLVNDAECNVFNGDLGYITDLLPAKYTESKQDE
LTINFDGNEISYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITRSSHRMLQRNLVYTAITRAKSKLILLGERSAFDYAV
KNTGTARKTYLIQRFGDVGNPQEIIHTPVDNAEPPVENYILTEENFLTIDPLIGLTEEDIHSIFGNVNQIETDA

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=48564 I872_RS08795 WP_015605749.1 1778213..1780597(+) (recD/recD2/recDB) [Streptococcus cristatus AS 1.3089]
ATGACAGAATTTTATTTTTCAGGCACTATTGAGCGCATCATTTTTGAGAATCCCAGCAACTTCTTTCGAATTCTCCTCTT
GGATATCCAAGACACGGATTGTGAAGATTTTGATGATTTTGAGATTATCGTTACCGGCACTATGGCCGATGTTATCGAAG
GTGAAGATTATACATTTTGGGGCAATCTAGTTCAGCATCCCAAGTACGGACAGCAGCTCAAAATTTCCCGCTATGAGCGC
GCAAAACCAACTAGCAAGGGGCTGGTTAAATATTTTTCCAGTGACCACTTTAAAGGTATCGGCGTCAAAACAGCCCAAAA
AATCGTGGATCTTTATGGGGAGGAAACCATTGACAAGATTTTAGCTGAACCAGAAAAACTCAAAGAAATCACTGGCCTTT
CCGCTAAAAATCGAGAAGCCTTTGTTGCCAAACTGCAACTCAACTATGGAACAGAGTTGGTCTTAGCCAAACTGGCAGCC
TATGGCATTCCTAACAAACTAGCCTTTCAAATCCAAGAAACTTACAAGGAAGAAACGCTGGAAGTTGTCGAGCACTATCC
CTACCAACTAGTTGAAGACATCCAAGGCATCGGCTTTAAGATCGCCGATCAGTTGGCCCAGCAGTTGGGCATTGAGAGTG
ATGCCCCTGAGCGTTTTCGGGCTGGCTTGATTCACACCCTTCTGACCCAGTCCATGGAAACTGGCGACACCTATTTGGAG
GCCAGAGACCTATTGGCTCATACTATTGAGCTTTTGGAAAGTTCGCGTCAAGTAGAACTAGATCCCAGTCTGGTAGCCAA
TGAATTGGCTCACCTGATTGAGGAAGACAAGGTCCAGAATGTCGAAACAAAAATTTTTGAGAACAGTCTCTTCTTTGCCG
AAGAAGGCATCCGCAGTAATCTGGTCCGCCTCTTGGAAAAAGGCCATCAGGATCGATTCGAAGAAGAGAAAATCCTCGGT
GCCATCAGCCAAGCTGAAGATGAACTAGGCATCCACTATGATGGTATTCAGAAACAGGCTATTTTCGACGCTATCACACA
AAAAGTCTTTATCCTGACGGGTGGACCAGGAACAGGCAAAACAACCGTCATCAATGGTATCATTGCCGTCTACAGCCAGC
TTCGAGGCTTGGATTTGAAAAAGAAGGCCGATTTGCCCATTCTTCTAGCTGCTCCAACTGGTCGGGCTGCTCGCCGTATG
AATGAGCTGACTGGACTGCCCAGTGCTACGATTCACCGGCATCTCGGTATGACTGGAGATGATGACAGCAGTCATCTGGA
TGATTATCTAGATGCTGACTTTATCATCGTGGACGAATTTTCTATGGTGGATACTTGGCTAGCCAACCAGCTCCTCAGCA
ACATCTCCTCCAACACCAAATTGCTCTTGGTCGGAGATGCAGAGCAGTTGCCCTCTGTCAGTCCCGGTCAGGTATTAGCT
GACCTACTGCAAATACCGAGCATCCCCCAAACCAAGCTGGAAAAAATTTACCGTCAGAGTCAAGATTCGACCATTGTCAC
TCTGGCTAGTCAGATCCAAAAAGGACTGCTGCCAGCAGATTTTACTGAGAAAAAAGCAGATCGCTCTTATTTTGAAGCTC
GAAATGAACACATCTCACCCATGATCGAACGAATTACCAGCGCAGCTATTCGCAGCGGCATCCCAGCTCAGGATGTGCAA
GTGCTGGCTCCCATGTACCGCGGACAGGCCGGCATTGACCAGATTAACAGCCTCATGCAAAATCTCATCAATCCTGTGGA
AAAAGATCAGCTAACCTTTGAGGCACCTGACTGCCAATATCGACAGGGAGATCGGGTCATCCATCTCGTCAATGATGCTG
AATGCAATGTCTTTAACGGTGACTTGGGCTATATCACCGACCTGCTGCCAGCTAAGTACACCGAATCCAAGCAGGACGAA
CTGACCATCAACTTTGACGGCAACGAGATTAGCTATCAGCGCAGCGAATGGTACAAAATCCGCCTAGCCTATGCCATGAG
CATCCACAAGTCTCAAGGCAGCGAGTTTCCCGTGGTCATCCTTCCCATTACCCGAAGCAGCCACCGCATGCTCCAGCGCA
ATCTGGTCTACACAGCCATTACCCGAGCCAAGAGCAAACTGATCCTACTTGGGGAAAGGTCAGCCTTTGACTACGCCGTA
AAAAATACCGGTACAGCTCGCAAAACCTATCTGATTCAACGTTTTGGAGATGTTGGAAATCCCCAAGAAATTATCCACAC
TCCTGTTGATAACGCCGAACCACCTGTTGAAAACTATATCTTAACTGAGGAAAATTTCCTAACAATCGATCCTTTAATCG
GATTGACTGAGGAAGATATCCACAGTATATTTGGCAATGTCAACCAAATAGAAACAGATGCCTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(335-524)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-238)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.365

94.081

0.389

Multiple sequence alignment