Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IE382_RS10280 Genome accession   NZ_CP061870
Coordinates   1967586..1968365 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain FX-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1962586..1973365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS10260 (IE382_10210) trmFO 1963280..1964587 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IE382_RS10265 (IE382_10215) xerC 1964655..1965569 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  IE382_RS10270 (IE382_10220) clpQ 1965582..1966127 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  IE382_RS10275 (IE382_10225) hslU 1966135..1967547 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  IE382_RS10280 (IE382_10230) codY 1967586..1968365 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IE382_RS10285 (IE382_10235) flgB 1968745..1969134 (+) 390 WP_041335963.1 flagellar basal body rod protein FlgB -
  IE382_RS10290 (IE382_10240) flgC 1969134..1969586 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  IE382_RS10295 (IE382_10245) fliE 1969597..1969917 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  IE382_RS10300 (IE382_10250) fliF 1969963..1971573 (+) 1611 WP_072557157.1 flagellar basal-body MS-ring/collar protein FliF -
  IE382_RS10305 (IE382_10255) fliG 1971586..1972602 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  IE382_RS10310 (IE382_10260) fliH 1972595..1973347 (+) 753 WP_026113606.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=485436 IE382_RS10280 WP_003220850.1 1967586..1968365(+) (codY) [Bacillus subtilis strain FX-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=485436 IE382_RS10280 WP_003220850.1 1967586..1968365(+) (codY) [Bacillus subtilis strain FX-1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGTTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467