Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J8617_RS20490 Genome accession   NZ_CP072802
Coordinates   4215235..4215972 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PK5074     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4210235..4220972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8617_RS20460 (J8617_20450) - 4210567..4210758 (-) 192 Protein_4038 hypothetical protein -
  J8617_RS20465 (J8617_20455) aroF 4210968..4212038 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  J8617_RS20470 (J8617_20460) tyrA 4212049..4213170 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  J8617_RS20475 (J8617_20465) pheA 4213213..4214373 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  J8617_RS20480 (J8617_20470) pheL 4214472..4214519 (-) 48 WP_010723158.1 phe operon leader peptide -
  J8617_RS20485 (J8617_20475) raiA 4214623..4214964 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J8617_RS20490 (J8617_20480) comL 4215235..4215972 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J8617_RS20495 (J8617_20485) rluD 4216107..4217087 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J8617_RS20500 (J8617_20490) yfiH 4217084..4217815 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  J8617_RS20505 (J8617_20495) clpC 4217945..4220518 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=485384 J8617_RS20490 WP_000197686.1 4215235..4215972(-) (comL) [Escherichia coli strain PK5074]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=485384 J8617_RS20490 WP_000197686.1 4215235..4215972(-) (comL) [Escherichia coli strain PK5074]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376