Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   IE339_RS19595 Genome accession   NZ_CP061868
Coordinates   3715736..3718096 (-) Length   786 a.a.
NCBI ID   WP_242170362.1    Uniprot ID   -
Organism   Priestia koreensis strain FS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3710736..3723096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE339_RS19570 (IE339_19550) - 3711148..3711318 (-) 171 WP_157052668.1 hypothetical protein -
  IE339_RS19575 (IE339_19555) - 3711504..3712382 (+) 879 WP_242170350.1 N-acetylmuramoyl-L-alanine amidase -
  IE339_RS19580 (IE339_19560) dtd 3712421..3712867 (-) 447 WP_242170352.1 D-aminoacyl-tRNA deacylase -
  IE339_RS19585 (IE339_19565) - 3712883..3715078 (-) 2196 WP_242170356.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  IE339_RS19590 (IE339_19570) - 3715224..3715736 (-) 513 WP_242170359.1 adenine phosphoribosyltransferase -
  IE339_RS19595 (IE339_19575) recJ 3715736..3718096 (-) 2361 WP_242170362.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  IE339_RS19600 (IE339_19580) secDF 3718355..3720604 (-) 2250 WP_242170365.1 protein translocase subunit SecDF -
  IE339_RS19605 (IE339_19585) - 3720735..3721025 (-) 291 WP_242170368.1 post-transcriptional regulator -
  IE339_RS19610 (IE339_19590) spoVB 3721157..3722707 (+) 1551 WP_242170372.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88479.12 Da        Isoelectric Point: 4.8759

>NTDB_id=485384 IE339_RS19595 WP_242170362.1 3715736..3718096(-) (recJ) [Priestia koreensis strain FS-1]
MLKSKRRWNIQQPNNEVVEDLAKSLNIPPLIASLLINRGMTTKESASQFLNIENQSFHDPFLLDGMDRAVERIHKAIENN
EKIMIYGDYDADGVTSTSVMLTALQQLGADVDFYIPNRFSEGYGPNEEAFRFIDEQGYTLVITVDTGISAVHEAQVAEEL
AFDLIITDHHEPGPVLPSCYAILHPKKPGSHYPFGHLAGVGVAFKLAHALLGEVPEHLLELAVIGTIADLVPLTGENRLI
AKKGLKRLAYSQRPGLKALFKVCNVKQQELTEDSIGFALAPRINAVGRLQDADPAVELIMSKNEEEALLLAEEIDRLNKE
RQALVNEITEEAIRKVEEMYPPSENAVLVITGEGWNAGVIGIVASRLVDRFYRPTIVLSEDHEKGVAKGSARSIAGFDLF
ANLSTCREILPHFGGHPMAAGMTLKLEDVAELRERLNQLAKEVLSDEDFIPVTSIDVSCKVEDVTIEAIEQLQLMAPFGM
NNPKPKVAIAPSAIQSIRKIGADQTHMKLVIEDNGQALDAIGFGFGYLYEDISPLAEISLMGELNINEWNNIRKPQLMIE
DMAVNDWQLFDLRGLRDPARFFQSTYHEKMTLLAFSEETLTHAALQPYRDQIVLVQHADEAKQVHVENETIVLLDLPTSS
ELIEGLFAGRVPARIYAIFFTAENHFFDTIPTREHFKWYYAFLTKKSPFDLKRYKEELAIYKGWTKDTIDFMSQVFFELE
FVTIENGLISLVKNSPKRDLIESVTFRHKQEHIQIEKNFLYTSYAHLKSVFEQVFKRASINEEATN

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=485384 IE339_RS19595 WP_242170362.1 3715736..3718096(-) (recJ) [Priestia koreensis strain FS-1]
ATGCTAAAATCAAAAAGGCGTTGGAACATCCAACAACCAAATAACGAAGTAGTAGAAGACTTAGCAAAGAGTTTAAATAT
TCCACCTTTAATTGCCTCCTTGCTGATTAATCGTGGCATGACGACGAAAGAATCTGCCTCACAGTTTTTAAATATAGAGA
ATCAATCTTTTCACGACCCGTTTTTATTAGACGGAATGGATCGCGCTGTAGAACGTATTCATAAAGCGATTGAAAATAAT
GAAAAGATTATGATTTACGGAGATTACGATGCTGATGGGGTAACAAGCACATCCGTTATGCTGACGGCGCTGCAGCAGCT
TGGCGCAGATGTGGACTTTTACATTCCGAACCGTTTTTCGGAAGGATATGGTCCAAACGAAGAAGCATTTCGTTTTATTG
ATGAACAGGGCTACACGTTAGTCATTACGGTTGATACAGGTATTTCTGCTGTTCATGAAGCACAGGTAGCAGAGGAGCTT
GCGTTTGATTTAATCATTACCGATCACCATGAGCCAGGCCCTGTTCTGCCATCTTGCTATGCGATTTTACATCCGAAAAA
GCCTGGAAGTCACTATCCGTTTGGTCATCTAGCAGGGGTGGGGGTGGCATTTAAGCTTGCCCATGCGCTGCTCGGTGAAG
TTCCGGAGCATTTATTAGAGCTAGCAGTCATTGGAACAATCGCTGACTTGGTACCGCTAACGGGTGAGAATCGCCTGATC
GCAAAAAAAGGCTTAAAGCGTCTAGCGTATTCACAGCGCCCTGGACTGAAGGCTCTTTTTAAAGTATGTAACGTGAAGCA
ACAAGAGCTGACGGAGGATTCCATTGGCTTTGCACTTGCACCGCGCATTAATGCGGTCGGTCGTCTTCAAGATGCTGATC
CTGCTGTAGAACTGATTATGTCTAAAAATGAAGAAGAGGCCCTTCTTTTAGCAGAGGAAATTGACCGCTTAAATAAGGAA
CGTCAAGCATTGGTGAATGAAATTACAGAAGAAGCGATTCGAAAAGTGGAAGAAATGTACCCACCTTCTGAAAATGCTGT
TCTCGTCATTACAGGTGAGGGCTGGAACGCAGGTGTGATCGGAATTGTTGCCTCTCGTTTGGTTGATCGCTTTTATCGTC
CGACCATCGTTCTAAGCGAGGATCATGAAAAGGGCGTGGCAAAAGGCTCGGCACGGAGTATCGCTGGGTTTGATCTATTT
GCGAACTTATCAACCTGTCGTGAGATTTTGCCTCACTTCGGTGGACATCCAATGGCAGCAGGGATGACGTTGAAGCTTGA
AGACGTAGCAGAGCTTCGCGAACGCCTAAATCAGCTGGCAAAAGAAGTGTTAAGTGACGAAGATTTTATTCCCGTTACGT
CGATTGATGTTTCATGTAAAGTAGAAGACGTGACAATTGAAGCGATTGAACAGCTTCAGCTCATGGCTCCGTTTGGGATG
AACAATCCAAAACCGAAAGTAGCGATTGCACCATCAGCGATCCAATCTATTCGAAAAATTGGCGCGGACCAAACACATAT
GAAGCTTGTAATTGAAGATAATGGACAAGCGCTCGATGCGATTGGCTTTGGCTTTGGTTATTTATATGAAGATATTTCAC
CACTTGCAGAAATTTCATTAATGGGTGAATTAAATATTAATGAGTGGAATAATATTCGTAAGCCACAGCTTATGATTGAG
GATATGGCTGTTAATGATTGGCAGTTATTTGATCTTCGAGGTCTACGTGATCCTGCACGTTTCTTCCAATCTACGTATCA
CGAGAAAATGACGCTGCTTGCGTTCTCGGAGGAGACGCTGACACACGCAGCCCTTCAACCGTATCGTGATCAGATTGTGC
TCGTTCAACATGCAGACGAAGCGAAGCAAGTACATGTAGAGAATGAGACGATTGTTCTGCTAGATCTGCCAACGTCTTCT
GAACTGATCGAAGGATTATTTGCAGGTCGTGTGCCAGCCCGTATTTATGCGATTTTCTTCACAGCTGAGAATCATTTCTT
TGATACGATTCCAACACGGGAGCATTTTAAATGGTACTATGCGTTTCTAACGAAGAAGAGTCCATTTGACCTGAAGCGTT
ATAAAGAAGAGCTTGCTATTTACAAAGGATGGACTAAAGATACAATTGACTTCATGTCACAGGTGTTTTTTGAGCTAGAA
TTTGTTACAATAGAAAATGGTCTGATTTCATTGGTGAAAAATAGTCCAAAACGTGATTTAATAGAATCTGTGACTTTTCG
TCACAAACAAGAGCACATTCAAATTGAAAAAAACTTTCTTTATACATCATATGCACATTTGAAAAGTGTGTTTGAACAGG
TTTTTAAGCGTGCGTCAATTAATGAGGAGGCAACAAACTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.904

99.873

0.548