Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   IE339_RS19520 Genome accession   NZ_CP061868
Coordinates   3698991..3701339 (-) Length   782 a.a.
NCBI ID   WP_242170330.1    Uniprot ID   -
Organism   Priestia koreensis strain FS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3693991..3706339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE339_RS19495 (IE339_19475) - 3694004..3694270 (-) 267 WP_053401030.1 IreB family regulatory phosphoprotein -
  IE339_RS19500 (IE339_19480) alaS 3694354..3696987 (-) 2634 WP_242170325.1 alanine--tRNA ligase -
  IE339_RS19505 (IE339_19485) - 3697319..3698380 (-) 1062 WP_242170328.1 AI-2E family transporter -
  IE339_RS19510 (IE339_19490) - 3698491..3698625 (-) 135 WP_083446484.1 YrzQ family protein -
  IE339_RS19515 (IE339_19495) - 3698652..3698843 (-) 192 WP_053401027.1 hypothetical protein -
  IE339_RS19520 (IE339_19500) recD2 3698991..3701339 (-) 2349 WP_242170330.1 ATP-dependent RecD-like DNA helicase Machinery gene
  IE339_RS19525 (IE339_19505) - 3701375..3702025 (-) 651 WP_242170332.1 tetratricopeptide repeat protein -
  IE339_RS19530 (IE339_19510) mnmA 3702141..3703253 (-) 1113 WP_242170334.1 tRNA 2-thiouridine(34) synthase MnmA -
  IE339_RS19535 (IE339_19515) - 3703278..3704420 (-) 1143 WP_242170336.1 cysteine desulfurase family protein -
  IE339_RS19540 (IE339_19520) - 3704441..3704857 (-) 417 WP_242170339.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 88709.38 Da        Isoelectric Point: 5.2626

>NTDB_id=485383 IE339_RS19520 WP_242170330.1 3698991..3701339(-) (recD2) [Priestia koreensis strain FS-1]
MSDEQTTAVEERFIKGTAIVTIFHNEENLYNVARIRVKETNLTLEDKEAVVTGYFPRLHEDEYYTFYGHFKEHPKFGLQF
NVERFKKELPQSKQGVIQYLSSDLFHGIGKKTAESIVDTLGERAIYKIMKDPNVLKKVPKLSGEKAITLVEQLREHQGLE
EVMIKLTDYGFGPQLSMKIFQAYKNEALDVIKRNPYQLVEDVQGIGFNRADELGRKLGMEGNHPDRIRAGILYVLEQECN
QIGHVYLTFEQLQQQTIALLQKNHQDGITFDDVMDEMERLKDDKKLVLADDKAYIPPLYYAEKGVATAIKRVLEQTEYTD
QFPESEFLLALGELEERLSVQYAPSQREAIQTALMSPMMLLTGGPGTGKTTVIKGIVELYAELHGCSLDPGEYKKDETFP
VLLVAPTGRAAKRMSESTGLPAVTIHRLLKWNGQEGFEHNEDQPIEGKLLIVDEMSMVDTWLAHQLMKSLPVHIQVIFVG
DEDQLPSVGPGQVLRDLLQANVIPTVRLTDIYRQEHGSSIIDLAHAIKKGELPPDIRQPQPDRSFIKCTTAQISEVVQKV
SANAFKKGYQVKDIQVLAPMYRGPAGIDQMNVILQELFNPPSQQRREVKHGDVVYRVGDKVLQLVNQPESHVFNGDMGEI
VSVFYAKENTEKQDMLVISFDGNEVTYTKQDFNQITHAYCCSIHKSQGSEFSIVILPVVKSYYRMLRRNLIYTAVTRSKN
FLILCGEEDALNLGIKRNDDGMRQTTLLSLLQSEDVPHDPNEVPFMADANIGMENVTPYDFM

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=485383 IE339_RS19520 WP_242170330.1 3698991..3701339(-) (recD2) [Priestia koreensis strain FS-1]
ATGTCTGATGAACAAACGACTGCGGTCGAGGAACGCTTCATTAAGGGAACAGCCATTGTCACGATTTTTCATAATGAAGA
AAACCTGTACAACGTTGCTCGCATTCGAGTAAAAGAAACGAATTTAACGTTAGAGGATAAGGAAGCGGTCGTGACAGGGT
ATTTCCCTCGCCTTCATGAGGACGAATATTATACGTTTTATGGGCATTTTAAAGAGCATCCAAAATTCGGCCTGCAGTTC
AACGTAGAGCGATTTAAGAAAGAGCTTCCGCAGTCAAAGCAAGGCGTCATTCAGTATTTATCGAGCGATTTGTTTCATGG
AATCGGTAAAAAGACGGCTGAGAGCATTGTCGATACGCTTGGTGAACGAGCGATTTATAAGATCATGAAAGACCCAAACG
TGTTAAAGAAAGTACCGAAGCTATCCGGTGAAAAAGCGATTACGCTTGTCGAACAACTTCGTGAGCATCAAGGGCTAGAA
GAAGTCATGATTAAGCTGACGGACTATGGTTTTGGTCCGCAGCTGTCGATGAAGATTTTCCAAGCGTACAAAAACGAGGC
ACTAGACGTTATTAAGCGCAATCCGTATCAGCTTGTTGAAGACGTTCAGGGAATTGGCTTTAATCGTGCGGATGAGCTTG
GTCGTAAGCTCGGAATGGAAGGAAATCATCCAGATCGAATTCGAGCTGGAATTTTATACGTGCTCGAACAGGAGTGCAAT
CAAATTGGTCACGTATACTTAACGTTTGAACAGCTACAGCAGCAAACCATCGCACTGCTACAAAAAAATCATCAAGACGG
GATCACCTTTGACGATGTGATGGACGAGATGGAGCGGTTGAAAGATGACAAAAAGCTAGTGCTAGCGGATGATAAAGCGT
ATATTCCACCTCTTTACTACGCTGAAAAAGGTGTTGCGACGGCCATTAAGCGAGTTCTTGAGCAAACCGAATATACCGAT
CAATTTCCAGAATCGGAATTTTTGTTGGCGCTCGGTGAGTTAGAAGAGCGTTTGAGCGTTCAATACGCGCCTTCACAGCG
TGAGGCTATTCAAACCGCCCTTATGTCTCCGATGATGCTGTTAACAGGAGGTCCTGGTACGGGGAAAACGACCGTTATTA
AAGGAATCGTCGAGCTCTATGCAGAACTGCACGGCTGTTCGCTAGATCCGGGTGAATACAAAAAGGATGAAACGTTCCCT
GTTCTCCTCGTCGCTCCAACAGGACGGGCGGCAAAACGAATGAGCGAGTCCACTGGTTTACCGGCGGTCACCATTCATCG
CCTTTTAAAATGGAACGGACAAGAGGGATTCGAGCACAACGAAGATCAGCCGATTGAAGGAAAGCTATTAATTGTCGATG
AAATGTCGATGGTGGACACGTGGCTTGCTCACCAGCTGATGAAGTCTCTCCCTGTACATATTCAAGTCATCTTCGTAGGA
GATGAAGATCAGCTTCCGTCTGTTGGACCAGGACAAGTTCTTCGCGACTTATTGCAGGCGAATGTCATTCCAACGGTTAG
GCTAACGGATATTTATCGCCAAGAACACGGCTCTTCCATTATTGATTTGGCCCACGCCATAAAAAAGGGAGAGCTTCCTC
CTGATATTAGACAGCCACAGCCAGACCGTTCATTTATTAAATGCACGACGGCGCAAATTAGCGAGGTAGTGCAAAAGGTT
TCTGCCAATGCATTTAAAAAGGGCTATCAGGTGAAGGACATTCAAGTGCTTGCTCCGATGTATCGAGGACCTGCGGGCAT
TGATCAAATGAACGTCATTCTGCAAGAGCTATTTAATCCGCCTTCTCAGCAGCGCAGAGAAGTAAAGCACGGAGACGTCG
TGTACAGAGTCGGTGACAAAGTTCTGCAGCTCGTCAATCAGCCGGAAAGTCACGTATTTAACGGTGATATGGGTGAGATC
GTCTCCGTTTTTTATGCGAAGGAGAACACGGAGAAGCAGGATATGCTGGTCATTTCGTTTGATGGCAATGAGGTAACCTA
TACAAAGCAAGATTTTAATCAAATTACTCATGCGTACTGCTGCTCCATTCATAAATCACAGGGGAGCGAATTTTCCATCG
TGATTTTGCCGGTTGTAAAAAGTTATTATCGTATGCTGCGTCGTAATTTAATTTATACGGCCGTGACGCGAAGTAAAAAC
TTTTTAATTTTGTGCGGTGAAGAAGACGCGTTGAACTTAGGAATTAAGCGGAACGATGATGGGATGAGGCAAACAACCCT
GCTTTCTTTGCTGCAAAGTGAGGATGTTCCTCATGATCCGAATGAGGTCCCATTTATGGCAGATGCAAATATTGGCATGG
AAAACGTTACGCCGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-725)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-246)

AAA domain (AAA_30)

(342-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

65.473

100

0.655