Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BAMOH1_RS08140 Genome accession   NZ_CP061853
Coordinates   1630420..1631199 (+) Length   259 a.a.
NCBI ID   WP_160182664.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MOH1-5b     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1625420..1636199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMOH1_RS08120 (BAMOH1_08120) trmFO 1626107..1627414 (+) 1308 WP_160182662.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BAMOH1_RS08125 (BAMOH1_08125) xerC 1627484..1628401 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  BAMOH1_RS08130 (BAMOH1_08130) hslV 1628417..1628962 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  BAMOH1_RS08135 (BAMOH1_08135) hslU 1628979..1630382 (+) 1404 WP_160182663.1 HslU--HslV peptidase ATPase subunit -
  BAMOH1_RS08140 (BAMOH1_08140) codY 1630420..1631199 (+) 780 WP_160182664.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BAMOH1_RS08145 (BAMOH1_08145) flgB 1631553..1631942 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  BAMOH1_RS08150 (BAMOH1_08150) flgC 1631942..1632394 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  BAMOH1_RS08155 (BAMOH1_08155) fliE 1632405..1632725 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BAMOH1_RS08160 (BAMOH1_08160) fliF 1632768..1634378 (+) 1611 WP_191389743.1 flagellar basal-body MS-ring/collar protein FliF -
  BAMOH1_RS08165 (BAMOH1_08165) fliG 1634391..1635407 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  BAMOH1_RS08170 (BAMOH1_08170) fliH 1635400..1636155 (+) 756 WP_017417778.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29098.32 Da        Isoelectric Point: 4.6062

>NTDB_id=485280 BAMOH1_RS08140 WP_160182664.1 1630420..1631199(+) (codY) [Bacillus amyloliquefaciens strain MOH1-5b]
MVLLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENERMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=485280 BAMOH1_RS08140 WP_160182664.1 1630420..1631199(+) (codY) [Bacillus amyloliquefaciens strain MOH1-5b]
ATGGTTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGAACGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATCCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACA
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

98.456

100

0.985
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467