Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BAINH2_RS08065 Genome accession   NZ_CP061852
Coordinates   1632847..1633626 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain INH2-4b     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1627847..1638626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAINH2_RS08045 (BAINH2_08045) trmFO 1628534..1629841 (+) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BAINH2_RS08050 (BAINH2_08050) xerC 1629911..1630828 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  BAINH2_RS08055 (BAINH2_08055) hslV 1630844..1631389 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  BAINH2_RS08060 (BAINH2_08060) hslU 1631406..1632809 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  BAINH2_RS08065 (BAINH2_08065) codY 1632847..1633626 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BAINH2_RS08070 (BAINH2_08070) flgB 1633980..1634369 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  BAINH2_RS08075 (BAINH2_08075) flgC 1634369..1634821 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  BAINH2_RS08080 (BAINH2_08080) fliE 1634832..1635152 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BAINH2_RS08085 (BAINH2_08085) fliF 1635195..1636805 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  BAINH2_RS08090 (BAINH2_08090) fliG 1636818..1637834 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  BAINH2_RS08095 (BAINH2_08095) fliH 1637827..1638582 (+) 756 WP_053573438.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=485203 BAINH2_RS08065 WP_003154263.1 1632847..1633626(+) (codY) [Bacillus amyloliquefaciens strain INH2-4b]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=485203 BAINH2_RS08065 WP_003154263.1 1632847..1633626(+) (codY) [Bacillus amyloliquefaciens strain INH2-4b]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471