Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IF132_RS13490 Genome accession   NZ_CP061845
Coordinates   1729631..1730329 (+) Length   232 a.a.
NCBI ID   WP_081946357.1    Uniprot ID   A0A099LRG0
Organism   Vibrio navarrensis strain 2540-90     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1724631..1735329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF132_RS13470 (IF132_14515) greB 1725047..1725529 (-) 483 WP_039422669.1 transcription elongation factor GreB -
  IF132_RS13475 (IF132_14520) - 1725765..1728086 (+) 2322 WP_039422668.1 Tex family protein -
  IF132_RS13480 (IF132_14525) - 1728166..1728633 (-) 468 WP_039422667.1 hypothetical protein -
  IF132_RS13485 (IF132_14530) bioH 1728774..1729541 (-) 768 WP_039422665.1 pimeloyl-ACP methyl ester esterase BioH -
  IF132_RS13490 (IF132_14535) comF 1729631..1730329 (+) 699 WP_081946357.1 phosphoribosyltransferase family protein Machinery gene
  IF132_RS13495 (IF132_14540) nfuA 1730464..1731048 (+) 585 WP_039422661.1 Fe-S biogenesis protein NfuA -
  IF132_RS13500 (IF132_14545) nudE 1731204..1731758 (+) 555 WP_039422660.1 ADP compounds hydrolase NudE -
  IF132_RS13505 (IF132_14550) cysQ 1731773..1732600 (+) 828 WP_039422658.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  IF132_RS13510 (IF132_14555) - 1732682..1733443 (-) 762 WP_039422656.1 type II secretion system protein N -
  IF132_RS13515 (IF132_14560) - 1733445..1733936 (-) 492 WP_039422655.1 type II secretion system protein M -
  IF132_RS13520 (IF132_14565) gspL 1733944..1735143 (-) 1200 WP_039422653.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26609.90 Da        Isoelectric Point: 9.2928

>NTDB_id=485042 IF132_RS13490 WP_081946357.1 1729631..1730329(+) (comF) [Vibrio navarrensis strain 2540-90]
MLTHWLREKTLRSLPRLCHLCGLPCSSASASLWCDHCLGYFSPTPRCRHCGLPTLSNVAECGQCLRTPPVWRRLYCLSDY
QFPTAWYVNQIKHQRQFRFCQPVAALLAERITEPAPLLLSVPMHWRRQWRRGFNQSDLFAAQLAHALGQHYLPDAFRRTT
HTPPQQGLNKQQRQRNLAGAFRLNRPIEAKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCICRTPEPK

Nucleotide


Download         Length: 699 bp        

>NTDB_id=485042 IF132_RS13490 WP_081946357.1 1729631..1730329(+) (comF) [Vibrio navarrensis strain 2540-90]
ATGTTAACTCATTGGCTGCGTGAAAAAACACTCCGATCACTGCCTAGGCTGTGTCACCTGTGCGGCTTACCTTGTTCATC
TGCCAGCGCCTCTCTATGGTGTGACCATTGCCTTGGCTATTTTTCGCCTACGCCTCGTTGTCGCCACTGTGGCTTGCCCA
CTTTAAGTAACGTCGCCGAATGCGGCCAATGCCTACGCACCCCGCCCGTTTGGCGACGCTTGTATTGCCTGAGCGACTAC
CAGTTTCCTACCGCTTGGTATGTCAATCAGATCAAACACCAGCGCCAATTTCGTTTCTGCCAACCCGTTGCCGCGCTCCT
TGCAGAACGCATTACTGAGCCCGCCCCACTGCTGCTCTCTGTCCCCATGCACTGGCGTCGGCAGTGGCGACGTGGCTTTA
ACCAGAGCGACCTTTTCGCCGCACAGTTGGCCCACGCCCTTGGGCAGCACTATCTGCCCGACGCCTTTCGTCGCACCACT
CACACGCCGCCACAACAAGGGCTCAACAAACAGCAGAGGCAGCGCAATCTCGCGGGCGCTTTTCGCTTAAATCGGCCAAT
TGAGGCCAAACACGTGGCGATTGTTGACGACGTCGTCACGACCGGCAGCACAGTGCGACAATTATGCCAATTACTGCTTG
CAGTCGGGGTGGAAAGCATTGATATTTATTGCATCTGCCGCACTCCTGAGCCGAAGTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099LRG0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.19

100

0.582
  comF Vibrio campbellii strain DS40M4

47.899

100

0.491