Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ID168_RS08095 Genome accession   NZ_CP061704
Coordinates   1607151..1607930 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain Y4_39     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602151..1612930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID168_RS08075 (ID168_08075) trmFO 1602838..1604145 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ID168_RS08080 (ID168_08080) xerC 1604215..1605132 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  ID168_RS08085 (ID168_08085) hslV 1605148..1605693 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  ID168_RS08090 (ID168_08090) hslU 1605710..1607113 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  ID168_RS08095 (ID168_08095) codY 1607151..1607930 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ID168_RS08100 (ID168_08100) flgB 1608284..1608673 (+) 390 WP_094246939.1 flagellar basal body rod protein FlgB -
  ID168_RS08105 (ID168_08105) flgC 1608673..1609125 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  ID168_RS08110 (ID168_08110) fliE 1609136..1609456 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ID168_RS08115 (ID168_08115) fliF 1609499..1611109 (+) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  ID168_RS08120 (ID168_08120) fliG 1611122..1612138 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ID168_RS08125 (ID168_08125) fliH 1612131..1612886 (+) 756 WP_094246938.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=484289 ID168_RS08095 WP_003154263.1 1607151..1607930(+) (codY) [Bacillus velezensis strain Y4_39]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=484289 ID168_RS08095 WP_003154263.1 1607151..1607930(+) (codY) [Bacillus velezensis strain Y4_39]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471