Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   J7886_RS01905 Genome accession   NZ_CP072539
Coordinates   447385..448149 (-) Length   254 a.a.
NCBI ID   WP_001136236.1    Uniprot ID   A7ZT17
Organism   Escherichia coli O128ac:H12 strain AW1.7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 442385..453149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7886_RS01880 (J7886_01880) yhhJ 444227..445351 (+) 1125 WP_001488398.1 ABC transporter permease -
  J7886_RS01885 (J7886_01885) - 445424..445699 (+) 276 WP_001259385.1 type II toxin-antitoxin system HicA family toxin -
  J7886_RS01890 (J7886_01890) - 445696..446055 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  J7886_RS01895 (J7886_01895) nikR 446175..446576 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  J7886_RS01900 (J7886_01900) nikE 446582..447388 (-) 807 WP_054626010.1 nickel import ATP-binding protein NikE -
  J7886_RS01905 (J7886_01905) amiE 447385..448149 (-) 765 WP_001136236.1 nickel import ATP-binding protein NikD Regulator
  J7886_RS01910 (J7886_01910) nikC 448149..448982 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  J7886_RS01915 (J7886_01915) nikB 448979..449923 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  J7886_RS01920 (J7886_01920) nikA 449923..451497 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  J7886_RS01925 (J7886_01925) acpT 451608..452195 (-) 588 WP_000285786.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.42 Da        Isoelectric Point: 6.5992

>NTDB_id=483988 J7886_RS01905 WP_001136236.1 447385..448149(-) (amiE) [Escherichia coli O128ac:H12 strain AW1.7]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=483988 J7886_RS01905 WP_001136236.1 447385..448149(-) (amiE) [Escherichia coli O128ac:H12 strain AW1.7]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398