Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J7D37_RS17500 Genome accession   NZ_CP072526
Coordinates   3672431..3673696 (-) Length   421 a.a.
NCBI ID   WP_001285411.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3667431..3678696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS17470 (J7D37_17470) pncA 3667656..3668300 (-) 645 WP_098714030.1 bifunctional nicotinamidase/pyrazinamidase -
  J7D37_RS17475 (J7D37_17475) dapA 3668630..3669523 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  J7D37_RS17480 (J7D37_17480) - 3669539..3670141 (+) 603 WP_001177091.1 hypothetical protein -
  J7D37_RS17485 (J7D37_17485) purC 3670179..3670898 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  J7D37_RS17490 (J7D37_17490) - 3671087..3671290 (+) 204 WP_000418559.1 hypothetical protein -
  J7D37_RS17495 (J7D37_17495) - 3671576..3672415 (+) 840 WP_000349499.1 formate/nitrite transporter family protein -
  J7D37_RS17500 (J7D37_17500) rarA 3672431..3673696 (-) 1266 WP_001285411.1 replication-associated recombination protein A Machinery gene
  J7D37_RS17505 (J7D37_17505) - 3673802..3674971 (-) 1170 WP_209303414.1 PQQ-dependent sugar dehydrogenase -
  J7D37_RS17510 (J7D37_17510) - 3675084..3675542 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  J7D37_RS17515 (J7D37_17515) - 3675737..3675895 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  J7D37_RS17520 (J7D37_17520) - 3676067..3676804 (+) 738 WP_000100767.1 dienelactone hydrolase family protein -
  J7D37_RS17525 (J7D37_17525) - 3676990..3677352 (+) 363 WP_000130110.1 HIT family protein -
  J7D37_RS17530 (J7D37_17530) mutY 3677493..3678527 (+) 1035 WP_209303329.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46960.62 Da        Isoelectric Point: 5.8354

>NTDB_id=483977 J7D37_RS17500 WP_001285411.1 3672431..3673696(-) (rarA) [Acinetobacter baumannii strain DETAB-E227]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDRFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=483977 J7D37_RS17500 WP_001285411.1 3672431..3673696(-) (rarA) [Acinetobacter baumannii strain DETAB-E227]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAGATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCACGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTGTTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41

95.012

0.39