Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PPM_RS12285 Genome accession   NC_017542
Coordinates   2719755..2721605 (+) Length   616 a.a.
NCBI ID   WP_013371192.1    Uniprot ID   -
Organism   Paenibacillus polymyxa M1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2714755..2726605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM_RS12260 (PPM_2351) rpsN 2714903..2715172 (+) 270 WP_013371188.1 30S ribosomal protein S14 -
  PPM_RS12265 (PPM_2352) - 2715450..2716460 (+) 1011 WP_013371189.1 CobW family GTP-binding protein -
  PPM_RS12270 - 2716489..2717281 (+) 793 Protein_2417 GTP cyclohydrolase, FolE2/MptA family -
  PPM_RS12275 (PPM_2355) - 2717512..2717919 (+) 408 WP_013371190.1 MarR family winged helix-turn-helix transcriptional regulator -
  PPM_RS12280 (PPM_2356) rcrP 2717999..2719768 (+) 1770 WP_013371191.1 ABC transporter ATP-binding protein Regulator
  PPM_RS12285 (PPM_2357) rcrQ 2719755..2721605 (+) 1851 WP_013371192.1 ABC transporter ATP-binding protein Regulator
  PPM_RS12295 (PPM_2358) - 2722499..2723389 (+) 891 WP_013371196.1 zinc-binding dehydrogenase -
  PPM_RS12300 (PPM_2359) trxA 2723519..2723836 (+) 318 WP_013371197.1 thioredoxin -
  PPM_RS12305 (PPM_2360) - 2723958..2724728 (+) 771 WP_013371198.1 SDR family NAD(P)-dependent oxidoreductase -
  PPM_RS12310 (PPM_2361) - 2724828..2725931 (+) 1104 WP_013371199.1 flavin monoamine oxidase family protein -
  PPM_RS12315 - 2726023..2726367 (+) 345 WP_013371200.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68193.03 Da        Isoelectric Point: 6.8231

>NTDB_id=48397 PPM_RS12285 WP_013371192.1 2719755..2721605(+) (rcrQ) [Paenibacillus polymyxa M1]
MDKNEHTVGSKHIKMKQQGPMGRGPTEGMGTGKKANDFRKNLRQLLSYIKTYAPMIILSMVLALAGSVFNVIGPDKLSDI
ANLIQEGIVTGIDINAIQKIVLVLVVLYGLGLIFNYFQGFITVTVSQRLTKKMRTELSRKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTITGIVATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCIVGALLVNQHVITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLDEEELKDESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
EAGQKVAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENVHKLFCMVLQDTWLFEGTIRENIVFSQDHVTD
EQVEAACRAVGLHSFLKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLGKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=48397 PPM_RS12285 WP_013371192.1 2719755..2721605(+) (rcrQ) [Paenibacillus polymyxa M1]
ATGGACAAGAATGAACACACCGTCGGCAGTAAGCATATCAAAATGAAACAGCAAGGTCCCATGGGTAGAGGTCCTACGGA
GGGGATGGGGACTGGTAAAAAAGCGAATGATTTTAGAAAAAACTTACGCCAGCTCTTATCCTACATCAAGACCTATGCGC
CTATGATTATCCTCTCTATGGTGCTGGCACTGGCCGGTTCCGTCTTCAATGTGATTGGTCCGGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATTGTAACAGGGATTGATATAAATGCTATTCAGAAGATTGTTCTTGTACTGGTAGTTTT
GTATGGTCTCGGCCTTATCTTTAATTATTTCCAAGGATTCATTACGGTAACCGTGTCACAGCGCCTTACAAAGAAGATGC
GGACAGAACTGTCCCGAAAAATTAATCATATGCCTTTGAAGTATTTTGATGCTACGAGCTATGGTAATGTGCTAAGCCGT
GTAACCAACGATGTCGATACCATTGGACAAACATTAAACAACAGTCTCGGCACACTTGTCAGCGCCTTGGCAACCTTTGT
GGGTGCATTGATTATGATGCTGTATACGAACTGGATCATGACCATTACCGGGATTGTAGCTACGCTGATTGGTTTTTCAC
TGATGACCGTAATTATGAAGCATTCACAAAAATATTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATT
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAGGAAGTGTTCCATGGCATTAA
TGGCCGCTTGTATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGTTATGTAGCGGTCTGTATCGTAGGCGCTTTGCTGGTGAACCAACATGTTATAACGATCGGAACTATTGTGGCCTTT
ATGGTGTATATTCGTCTATTTACACAGCCCTTGTCACAGTTGGCGCAGGCTGCAACCAATTTGCAATCGGCGGCTGCTGC
CAGTGAACGTGTATTCGAATTTCTGGATGAAGAAGAATTGAAAGATGAAAGTGACAAGACCATGAAGCTAGATAACGCCA
AAGGGGATGTTGAATTCAAACATGTTCGTTTCGGTTATAACGAAGACCATATGATTATCAAAGACTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAGTCGCCATTGTTGGCCCGACAGGTGCTGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGAGGGGAAATTTATATTGATGGAACTCCGATCAGCCAATTAACACGTGAGAATGTTCATAAATTATTCT
GTATGGTACTGCAGGATACATGGCTGTTTGAAGGAACGATTCGTGAGAATATCGTCTTTTCCCAAGACCATGTTACCGAT
GAACAGGTAGAAGCCGCATGTAGAGCAGTGGGTCTGCACAGCTTCCTTAAAACTCTGCCGCAGGGCTATGATACAGTACT
AGACGACAAAGCCAATCTCTCTGCTGGCCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCGCCTATGC
TCATATTGGACGAGGCCACAAGTTCGGTCGATACGCGTACGGAGTTGCTGATTCAACAAGCGATGGACCGACTTACTGTA
GGGAAAACCTCTTTTGTGATTGCCCACCGTCTCTCAACGATTAAGAACGCCGATCTGATTCTGGTCATGAAGGACGGTAA
CATTATCGAAACGGGTAATCATGAGGAATTGCTGGGTAAAGGCGGATTCTATGCCGATTTATATAACAGCCAGTTTGAAC
ATGCATCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(57-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.153

93.669

0.526

Multiple sequence alignment