Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LMM7_RS08005 Genome accession   NC_017537
Coordinates   1553264..1555660 (-) Length   798 a.a.
NCBI ID   WP_012581289.1    Uniprot ID   A0A0E0UX87
Organism   Listeria monocytogenes M7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1548264..1560660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMM7_RS07985 (LMM7_1591) - 1548726..1549421 (-) 696 WP_003725979.1 ABC transporter ATP-binding protein -
  LMM7_RS07990 (LMM7_1592) - 1549430..1550935 (-) 1506 WP_003730151.1 ABC transporter permease -
  LMM7_RS07995 (LMM7_1593) pieR 1551102..1551788 (+) 687 WP_003730152.1 two component system response regulator PieR -
  LMM7_RS08000 (LMM7_1594) pieS 1551785..1553224 (+) 1440 WP_014589074.1 two component system sensor histidine kinase PieS -
  LMM7_RS08005 (LMM7_1595) recD2 1553264..1555660 (-) 2397 WP_012581289.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LMM7_RS08010 (LMM7_1596) - 1555688..1556326 (-) 639 WP_077904947.1 tetratricopeptide repeat protein -
  LMM7_RS08015 (LMM7_1597) - 1556367..1557107 (-) 741 WP_012581288.1 alpha/beta hydrolase -
  LMM7_RS08020 (LMM7_1598) mnmA 1557225..1558340 (-) 1116 WP_012581287.1 tRNA 2-thiouridine(34) synthase MnmA -
  LMM7_RS08025 (LMM7_1599) - 1558359..1559507 (-) 1149 WP_012581286.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90071.16 Da        Isoelectric Point: 4.8404

>NTDB_id=48337 LMM7_RS08005 WP_012581289.1 1553264..1555660(-) (recD2) [Listeria monocytogenes M7]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLISYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFHRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQNILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDVLNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGIERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=48337 LMM7_RS08005 WP_012581289.1 1553264..1555660(-) (recD2) [Listeria monocytogenes M7]
ATGGCTGAACAAGAATCACTCGCTCTATTTAACGATACACCAGAAGAACTTTTCATGAAGGGCACGATGTTGTCCACCAT
TTTTTACAATGCCGAAAACCTCTTTTCTGTTGTACGAATATTGGTCAAAGAAACCAATGCGGATTGGGACGAAAAAGATA
TTATCGTAACTGGCTTTTTCCCAGCGCTTCACGAGCAAGAAGTGTACACTTTCTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAACAGTTTAAAGCAGACCGATTTCGTAAGGAAATGCCACAATCACGAGCGGGTTTAATTAGTTATCTATCTGG
TGAACTTTTTAAAGGCATTGGTAAAGTCACTGCTGAAAATATTGTGGATACGATTGGCGACGATGCTATCACAAAAATTT
TATCCGATCCGAGCTTGCTAAATACAGTACCTAAGTTGCCATCTGGCGCGGCAGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGGTTGGAGCATGTGATGGTCGGATTAAACGAATATGGCTTTGGTCCACAATTATCCATGAAAATTTTTCAGGC
TTATAAACAAAATGCGATTGAAGTATTAGAAAATAACCCCTATAAATTAATTGAAGACGTAAAAGGGATTGGTTTTCATC
GTGCCGACGAACTTGGGCGGAAACTAGGTCTTGGCGGGAATCATCCAGAACGGCTTCGTGCTGGGATTTTATTTATGTTA
GATTCGGTTTGTATGCAACAAGGTCATGTATATATGGAGCAAGAGGTTCTGCTCGGAGAAGTAACTTATTTACTGGAAGA
AAGCGAAGGCATTCGTATTGACCAAAATATTTTAGTGGCTCAAGTAGAAAAATTAGCCGAGGAACAAAAGATTATCACGG
AAAATACACGTGTTTACATGCCATCGCTCTATTATTCAGAGAGCGGCTTTGCATATCACGTGAAGCGAATGCTTAAACAA
ACAGAATACCAAGAACAATTTCCGCAATCTGAATTTCTGCTAGCTCTAGGTGAATTAGAAGAACGGATTGGAGTTCACTA
CGGAGATTCTCAACGTCAGGCGTTAGAACAAGCGTTAATGTCTCCGATGCTCGTACTTACTGGTGGTCCCGGAACAGGGA
AAACAACAGTTATTAAAGGGATAGTAGAGTTGTATGCGGAGCTAAATGGTGTAAGTCTTGATCCGCATGCCTATAAAGAT
GGAGCAACGTTTCCTGTGCTTCTTGCCGCTCCAACAGGTCGCGCTGCTAAACGAATGTCAGAATCAACTGGACTTCCGGC
GATGACTATTCACCGTCTGCTTGGAATGAACGGTCAGGAACAAATGGATGATGATGCAGAGCGGCTTATTGATGGACGAC
TATTGATTGTAGATGAGATGTCGATGGTTGATATTTGGCTTGCTAACCAATTATTTCGTGCTTTACCAGCGCATATGCAA
GTCGTACTCGTTGGTGACCAAGATCAATTGCCGTCTGTTGGACCAGGTCAAGTACTCAAAGATATTCTTCAATCAGAACA
AATTCCAACCGTAGCCCTTTCAGATATTTATCGCCAAAAGGATGGCTCATCCATTATCGAAATGGCGCATTATATAAAAG
AGGGAATGTTGCCAGCTGATTTCACCAAAAATAGCGCCGATCGCTCTTTTTTCCATTGTACGGTAAACCAAATTGGCGAT
GTAGTCGAACAAGTGGTGAAAAATGCCAAAAACAAAGGATTTCGAGCAAAAGATATCCAAGTTTTAGCGCCGATGTATCG
CGGTCCAGCAGGGATTGACGTTTTAAATAAAAAACTACAAGAAATCTTCAATCCAAATGATACCGGTCGTCGGAAAGAAG
TTCAATTTGGCGAAATAAAATATCGCGTGCATGATAAAGTACTTCAATTAATTAACCAACCGGAAAAGAATGTGTTTAAT
GGGGACATAGGTGAAATTGTGTCTATTATCTATGCGAAAGAAAATACCGAAAAACAAGATTTGATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTACTATAGACAAGAATTTAATCAATTGACCCATGCTTACTGTTGTTCGATTCATAAAGCACAGG
GAAGTGAATTTCCGATAGTGATTATGCCGATTGTTCGCAGTTATTACCGGATGCTACGCCGCGATTTACTTTACACAGGG
GTAACGAGGAGTAAACAGTTTCTTATTCTTTGCGGGGAAGAAGAAGCATTTCGAATGGGGATAGAACGAATTGATGAAAA
TAAGCGCAATACAACACTCTCTGAACGTTTAATGAGCGAAGATGTATTATTAGAGCAAATGACGAATAAACGAATTCTTA
CTGCTGAAAATATTACTGAAATAGATCCGATGATTGGAATGGAAGGGATTACGCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(347-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0UX87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.234

98.747

0.565

Multiple sequence alignment