Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IC792_RS06335 Genome accession   NZ_CP061578
Coordinates   1343374..1344081 (-) Length   235 a.a.
NCBI ID   WP_004702771.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS63     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338374..1349081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC792_RS06315 (IC792_06310) - 1339450..1340769 (+) 1320 WP_004702779.1 adenylosuccinate synthase -
  IC792_RS06320 (IC792_06315) - 1340896..1341213 (+) 318 WP_077168192.1 hypothetical protein -
  IC792_RS06325 (IC792_06320) - 1341331..1342110 (+) 780 WP_019458152.1 M48 family metallopeptidase -
  IC792_RS06330 (IC792_06325) - 1342165..1343214 (-) 1050 WP_077168193.1 NADP(H)-dependent aldo-keto reductase -
  IC792_RS06335 (IC792_06330) crp 1343374..1344081 (-) 708 WP_004702771.1 cAMP-activated global transcriptional regulator CRP Regulator
  IC792_RS06340 (IC792_06335) - 1344522..1344944 (+) 423 WP_039253874.1 OsmC family protein -
  IC792_RS06345 (IC792_06340) - 1345038..1345463 (+) 426 WP_077168194.1 GNAT family N-acetyltransferase -
  IC792_RS06350 (IC792_06345) - 1345460..1346266 (-) 807 WP_077168195.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26540.12 Da        Isoelectric Point: 4.6625

>NTDB_id=483322 IC792_RS06335 WP_004702771.1 1343374..1344081(-) (crp) [Acinetobacter seifertii strain AS63]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENSVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=483322 IC792_RS06335 WP_004702771.1 1343374..1344081(-) (crp) [Acinetobacter seifertii strain AS63]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
GCGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTGCGTGAAGATGACGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTCCGTACTCGTGATGTTTGTGAAATTGCAGA
AATTTCATATGACAACTTCCACGAACTGAGCAAGCAGTATCCAGATCTTAGCTACGCCGTTTTTGCGCAACTTGTTCGTC
GCTTAAAAAATACAACTCGCAAAATGACTGACCTTGCGTTCATTGACGTATCTGGTCGTATTGCTCGTTGCTTAATCGAC
TTATCTTCACAGCCAGAAGCAATGATCTTGCCGAATGGTCGTCAGATTCGTATCACTCGCCAAGAAATTGGACGTATTGT
TGGATGTTCACGCGAGATGGTTGGTCGTGTATTGAAGACTTTAGAAGATCAAGGCATGATCCAAACTGATGGTAAAGCCA
TTCTCATTTTTGATGCTTCATTAGAAGAGAATTCAGTCACTGATGAAGACTATGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

98.298

100

0.983
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404