NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	IC793_RS10745	Genome accession	NZ_CP061571
Coordinates	2195985..2196686 (-)	Length	233 a.a.
NCBI ID	WP_151685282.1	Uniprot ID	A0A7H2PM09
Organism	Acinetobacter seifertii strain AS70
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2190985..2201686

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC793_RS10715 (IC793_10710)	-	2191296..2191736 (-)	441	WP_019458999.1	SRPBCC family protein	-
IC793_RS10720 (IC793_10715)	tadA	2191806..2192308 (-)	503	Protein_2115	tRNA adenosine(34) deaminase TadA	-
IC793_RS10725 (IC793_10720)	-	2192316..2193440 (-)	1125	WP_151685288.1	enoyl-CoA hydratase/isomerase family protein	-
IC793_RS10730 (IC793_10725)	ung	2193437..2194150 (-)	714	WP_151685286.1	uracil-DNA glycosylase	-
IC793_RS10735 (IC793_10730)	-	2194201..2194797 (-)	597	WP_039251397.1	6-carboxytetrahydropterin synthase	-
IC793_RS10740 (IC793_10735)	gspK	2195027..2195985 (-)	959	Protein_2119	type II secretion system minor pseudopilin GspK	-
IC793_RS10745 (IC793_10740)	xcpW	2195985..2196686 (-)	702	WP_151685282.1	type II secretion system minor pseudopilin GspJ	Machinery gene
IC793_RS10750 (IC793_10745)	xcpV	2196686..2197066 (-)	381	WP_019458993.1	type II secretion system minor pseudopilin GspI	Machinery gene
IC793_RS10755 (IC793_10750)	-	2197056..2197607 (-)	552	WP_004701984.1	type II secretion system protein	-
IC793_RS10760 (IC793_10755)	-	2197617..2198225 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
IC793_RS10765 (IC793_10760)	-	2198263..2199036 (-)	774	WP_151742451.1	TatD family hydrolase	-
IC793_RS10770 (IC793_10765)	-	2199054..2199397 (-)	344	Protein_2125	PilZ domain-containing protein	-
IC793_RS10775 (IC793_10770)	-	2199410..2200390 (-)	981	WP_151685278.1	DNA polymerase III subunit delta'	-
IC793_RS10780 (IC793_10775)	kdsB	2200402..2201163 (-)	762	WP_039251406.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26470.41 Da Isoelectric Point: 9.7031

                                >NTDB_id=483281 IC793_RS10745 WP_151685282.1 2195985..2196686(-) (xcpW) [Acinetobacter seifertii strain AS70]

MIKNKYFCTRSKVSRLTARSSSARLARASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKIYRLKYTNLNTSNNEQPLS

STLLSQVDQYQVMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQVTVAGVSYEWVYSLNQSNLALSQQGGS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=483281 IC793_RS10745 WP_151685282.1 2195985..2196686(-) (xcpW) [Acinetobacter seifertii strain AS70]

ATGATAAAAAATAAGTACTTTTGCACCCGAAGCAAAGTTTCACGTCTTACGGCGCGATCGAGCAGTGCTCGATTAGCTCG

CGCATCAGGATTTACGTTGGTTGAGTTATTGGTTGCGATTGCTATTTTCGCGGTTTTATCTTTATTGGGGTGGAAAATAT

TCGATTATTTGCTCAAGGTGCGTGATCGTAACGCTGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTCTGCAAATTATTCCTTTATCTGCAAATCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACTGATCCTTTAAAACAGGGTTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCTGACCAAAAAAAAATATATCGTCTTAAATATACAAATTTAAATACTTCGAATAACGAGCAACCTTTATCA

AGTACCTTATTAAGCCAAGTTGACCAATATCAAGTTATGGTTTTGACTCCGCAAGAAGTAACAAAATGGCCCGAAGTTAA

TATTGATCCAACAAAACCTAACGAGTTAAAAAAATTACCGAAAGGAATAAAAATCCAAGTTACAGTTGCAGGAGTAAGTT

ATGAATGGGTTTATAGCTTAAATCAAAGCAACTTGGCACTTTCTCAGCAAGGTGGTTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7H2PM09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	92.275	100	0.923

Detailed information NTG0483281