NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	IC798_RS10125	Genome accession	NZ_CP061551
Coordinates	2129379..2130080 (-)	Length	233 a.a.
NCBI ID	WP_191106483.1	Uniprot ID	-
Organism	Acinetobacter seifertii strain AS78
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2124379..2135080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC798_RS10095 (IC798_10095)	-	2124689..2125129 (-)	441	WP_191106482.1	SRPBCC family protein	-
IC798_RS10100 (IC798_10100)	tadA	2125199..2125701 (-)	503	Protein_1989	tRNA adenosine(34) deaminase TadA	-
IC798_RS10105 (IC798_10105)	-	2125709..2126833 (-)	1125	WP_019458997.1	enoyl-CoA hydratase/isomerase family protein	-
IC798_RS10110 (IC798_10110)	ung	2126830..2127543 (-)	714	WP_004701973.1	uracil-DNA glycosylase	-
IC798_RS10115 (IC798_10115)	-	2127594..2128190 (-)	597	WP_039251397.1	6-carboxytetrahydropterin synthase	-
IC798_RS10120 (IC798_10120)	gspK	2128420..2129379 (-)	960	WP_039251398.1	type II secretion system minor pseudopilin GspK	-
IC798_RS10125 (IC798_10125)	xcpW	2129379..2130080 (-)	702	WP_191106483.1	type II secretion system minor pseudopilin GspJ	Machinery gene
IC798_RS10130 (IC798_10130)	xcpV	2130080..2130460 (-)	381	WP_019458993.1	type II secretion system minor pseudopilin GspI	Machinery gene
IC798_RS10135 (IC798_10135)	-	2130450..2131001 (-)	552	WP_004701984.1	type II secretion system protein	-
IC798_RS10140 (IC798_10140)	-	2131011..2131619 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
IC798_RS10145 (IC798_10145)	-	2131657..2132430 (-)	774	WP_077168509.1	TatD family hydrolase	-
IC798_RS10150 (IC798_10150)	-	2132448..2132789 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
IC798_RS10155 (IC798_10155)	-	2132802..2133782 (-)	981	WP_191106484.1	DNA polymerase III subunit delta'	-
IC798_RS10160 (IC798_10160)	kdsB	2133794..2134555 (-)	762	WP_191106485.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26444.33 Da Isoelectric Point: 9.7031

                                >NTDB_id=483124 IC798_RS10125 WP_191106483.1 2129379..2130080(-) (xcpW) [Acinetobacter seifertii strain AS78]

MIKNKYFCTRSKVSRLTARSSSARLARASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNNEQPLS

STLLSQVDQYQVMVLTPQEVTKWPEVNNDPTKPSDLKKLPKGIKIQVTVAGVSYEWIYSLNQSNLALSQQGGS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=483124 IC798_RS10125 WP_191106483.1 2129379..2130080(-) (xcpW) [Acinetobacter seifertii strain AS78]

ATGATAAAAAATAAGTACTTTTGCACCCGAAGCAAAGTTTCACGTCTTACGGCGCGATCGAGCAGTGCTCGATTAGCTCG

CGCCTCAGGATTTACGTTGGTTGAGTTATTGGTTGCGATTGCTATTTTCGCGGTTTTATCTTTATTGGGGTGGAAAATAT

TCGATTATTTGCTCAAGGTTCGTGATCGTAACGCTGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTCTGCAAATTATTCCTTTATCTGCAAATCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACTGATCCTTTAAAACAGGGTTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCTGACCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAATAACGAGCAACCTTTATCA

AGTACCTTACTAAGTCAAGTTGACCAATATCAAGTTATGGTTTTGACTCCGCAAGAAGTAACAAAATGGCCCGAAGTTAA

TAATGATCCAACAAAACCTAGCGACTTAAAAAAATTACCGAAAGGAATAAAAATCCAAGTTACAGTTGCAGGAGTAAGTT

ATGAATGGATTTATAGCTTAAATCAAAGCAACTTAGCACTTTCTCAGCAAGGTGGTTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	91.845	100	0.918

Detailed information NTG0483124