Detailed information NTG0483036

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: J7U26_RS08950
• Genome accession: NZ_CP072437
• Coordinates: 1733128..1734396 (-)
• Length: 422 a.a.
• NCBI ID: WP_002952183.1
• Uniprot ID: Q5M295
• Organism: Streptococcus thermophilus strain S24734
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1728128..1739396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U26_RS08925 (J7U26_08920)	-	1729209..1730750 (+)	1542	WP_014622049.1	ABC transporter ATP-binding protein	-
J7U26_RS08930 (J7U26_08925)	-	1731154..1731666 (-)	513	WP_014608793.1	helix-turn-helix domain-containing protein	-
J7U26_RS08935 (J7U26_08930)	-	1731982..1732686 (+)	705	Protein_1702	site-specific integrase	-
J7U26_RS08950 (J7U26_08945)	rarA	1733128..1734396 (-)	1269	WP_002952183.1	replication-associated recombination protein A	Machinery gene
J7U26_RS08955 (J7U26_08950)	rpmB	1734566..1734754 (+)	189	WP_084826191.1	50S ribosomal protein L28	-
J7U26_RS08960 (J7U26_08955)	-	1734881..1735147 (+)	267	WP_002952186.1	IreB family regulatory phosphoprotein	-
J7U26_RS08965 (J7U26_08960)	ruvX	1735147..1735566 (+)	420	WP_011681732.1	Holliday junction resolvase RuvX	-
J7U26_RS08970 (J7U26_08965)	-	1735675..1735980 (+)	306	WP_011681733.1	DUF1292 domain-containing protein	-
J7U26_RS08975 (J7U26_08970)	-	1736193..1737839 (+)	1647	WP_116920378.1	hypothetical protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46419.92 Da
• Isoelectric Point: 6.8977

>NTDB_id=483036 J7U26_RS08950 WP_002952183.1 1733128..1734396(-) (rarA) [Streptococcus thermophilus strain S24734]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide

• Length: 1269 bp

>NTDB_id=483036 J7U26_RS08950 WP_002952183.1 1733128..1734396(-) (rarA) [Streptococcus thermophilus strain S24734]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCAAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCAGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (173-251)

• ATPase family associated with various cellular activities (AAA) (AAA) (42-144)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-415)

3D structure

• AlphaFold DB: Q5M295

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	59.666	99.289	0.592