Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   J7U26_RS02735 Genome accession   NZ_CP072437
Coordinates   511907..513643 (+) Length   578 a.a.
NCBI ID   WP_116920135.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24734     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 506907..518643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U26_RS02705 (J7U26_02705) - 508141..508386 (+) 246 WP_014608076.1 efflux RND transporter periplasmic adaptor subunit -
  J7U26_RS02710 - 508448..508804 (+) 357 WP_023909473.1 ABC transporter permease -
  J7U26_RS02715 - 508917..509207 (+) 291 WP_023909475.1 ABC transporter permease -
  J7U26_RS02720 - 509216..509419 (+) 204 WP_011226966.1 ABC transporter permease -
  J7U26_RS02725 (J7U26_02715) rplJ 509709..510212 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  J7U26_RS02730 (J7U26_02720) rplL 510287..510655 (+) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  J7U26_RS02735 (J7U26_02725) rcrP 511907..513643 (+) 1737 WP_116920135.1 ABC transporter ATP-binding protein Regulator
  J7U26_RS02740 (J7U26_02730) rcrQ 513656..515443 (+) 1788 WP_011225638.1 ABC transporter ATP-binding protein Regulator
  J7U26_RS02745 (J7U26_02735) queA 515541..516584 (-) 1044 WP_084825831.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  J7U26_RS02750 (J7U26_02740) - 516734..517435 (+) 702 WP_041829023.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64694.58 Da        Isoelectric Point: 5.5823

>NTDB_id=482966 J7U26_RS02735 WP_116920135.1 511907..513643(+) (rcrP) [Streptococcus thermophilus strain S24734]
MSYIWSYLRRYPKWLAMNFTAAILFVIANLGMPTVLARMIDEGINCGDADKLYTYAWVMFGVVLTGIVGRVLLAYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKVGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPLLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSSKLFKLTGLTE
PLFVQIIITMIVAIVWFALNPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETDTKGYLEFDNVTFAYPGETESPVLHNISFKAKAGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQRALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=482966 J7U26_RS02735 WP_116920135.1 511907..513643(+) (rcrP) [Streptococcus thermophilus strain S24734]
ATGTCTTATATTTGGTCTTATCTCAGGCGTTACCCTAAGTGGCTAGCGATGAATTTTACAGCAGCCATTTTATTTGTTAT
TGCTAACCTGGGTATGCCGACGGTTCTTGCTAGAATGATTGATGAGGGAATTAACTGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGCCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGGTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGGTGG
GTGTTATCACTCCTCTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTACTAGCTGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTTGCTAGAGAAGATTTCC
AAGAGAAGAAGTTTGCCTCTGAAAATGCTGTCTATGCGGATAATTCAAGCAAGCTCTTTAAATTGACTGGTTTAACAGAG
CCACTTTTTGTACAAATCATCATCACTATGATTGTGGCTATTGTTTGGTTTGCCCTAAATCCATTAGGTTCTGGAACTCT
GGCAATCGGGGACTTGGTTGCCTTCATTGAGTACAGTTTCCATGCACTATTATCCTTCCTCTTTCTAGCTAATCTCTTTA
CTATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATTAACCCAAATGAA
GATGGGGTGACAGAGACTGATACTAAGGGATATTTGGAATTTGATAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTTCTACACAATATTTCTTTTAAGGCTAAGGCAGGTGAAACTATTGCCTTTATTGGGTCTACGGGCTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTCACACTTGGACGTATTCTTGTGGATGGTGTGGATGTACGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAGAGCTCTACTCTTTACTGGAACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCTAGTCATGAAGAATTGAATCAAGCTACGGACGTGGCTCAGGCTAAGGAATTTATTG
AAAGCAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATCTCTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTAAAAGAAGTGACTCAGGATGCGACGGTCTTGATCGTGGCTCAACGTGTGGGAACCATTATGG
ATGCTGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.377

91.696

0.37