NTDB

Overview

Name	codY	Type	Regulator
Locus tag	J7U23_RS07930	Genome accession	NZ_CP072435
Coordinates	1535427..1536212 (-)	Length	261 a.a.
NCBI ID	WP_372589888.1	Uniprot ID	-
Organism	Streptococcus thermophilus strain S24736
Function	repress the expression of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1530427..1541212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U23_RS07895 (J7U23_07825)	gatC	1530492..1530794 (-)	303	WP_002884769.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	-
J7U23_RS07900	-	1530934..1531095 (-)	162	WP_224103235.1	hypothetical protein	-
J7U23_RS07905	-	1531127..1531399 (-)	273	WP_224103183.1	glycosyltransferase	-
J7U23_RS07910 (J7U23_07840)	-	1531726..1533167 (-)	1442	Protein_1505	6-phospho-beta-glucosidase	-
J7U23_RS07915 (J7U23_07845)	msrA	1533320..1533829 (-)	510	WP_372589887.1	peptide-methionine (S)-S-oxide reductase MsrA	-
J7U23_RS07920 (J7U23_07850)	-	1533841..1534689 (-)	849	WP_041828318.1	MetQ/NlpA family ABC transporter substrate-binding protein	-
J7U23_RS07925 (J7U23_07855)	-	1534813..1535364 (-)	552	WP_084829819.1	cysteine hydrolase family protein	-
J7U23_RS07930 (J7U23_07860)	codY	1535427..1536212 (-)	786	WP_372589888.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
J7U23_RS07935 (J7U23_07865)	-	1536472..1537686 (-)	1215	WP_002951721.1	pyridoxal phosphate-dependent aminotransferase	-
J7U23_RS07940 (J7U23_07870)	-	1538041..1538493 (+)	453	WP_164178276.1	universal stress protein	-
J7U23_RS07945	-	1538673..1539244 (+)	572	Protein_1512	IS30 family transposase	-
J7U23_RS07950	-	1539316..1539912 (-)	597	WP_232086461.1	hypothetical protein	-
J7U23_RS07955 (J7U23_07880)	pflA	1540124..1540924 (-)	801	WP_002946980.1	pyruvate formate-lyase-activating protein	-

Sequence

Protein

Download Length: 261 a.a. Molecular weight: 28905.10 Da Isoelectric Point: 4.5802

                                >NTDB_id=482804 J7U23_RS07930 WP_372589888.1 1535427..1536212(-) (codY) [Streptococcus thermophilus strain S24736]

MANLLDKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEKFFKAKQLPEEYI

RGISRVYDTQENIGIDSDLTIFPVELKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDDDLILVEVASTVVGLQLLH

LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG

MKGTYLKVLNEGIYDKLKEYE

Nucleotide

Download Length: 786 bp

                                >NTDB_id=482804 J7U23_RS07930 WP_372589888.1 1535427..1536212(-) (codY) [Streptococcus thermophilus strain S24736]

ATGGCAAATTTGCTTGATAAAACACGTAAAATTACTTCTATCTTGCAACGCTCAGTAGATAGTTTGGAAGGAGATCTTCC

CTACAACAACATGGCTGCTCAGTTGGCAGATATTATTGATTGTAATGCTGCTATTGTAAATGGTGGAGGTGCTCTCCTTG

GTTTTGCTATGAAATACAAAACCAACAATGACCGTGTGGAAAAGTTTTTTAAAGCTAAACAACTTCCAGAGGAATACATA

CGTGGTATCAGTCGTGTTTATGATACTCAAGAAAATATCGGTATTGACAGTGACTTGACCATCTTCCCAGTGGAATTAAA

AGATGATTTCCCTGACGGTTTGACTACAATTGCACCAATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATTATTTGGC

GTAACGACCATGATTTTGTGGACGACGACCTTATCTTGGTTGAGGTTGCATCTACAGTAGTTGGTTTGCAATTGTTGCAT

CTTCAAACAGAAAACTTGGAAGAAACGATTCGTAAACAAACAGCTATTAATATGGCTATTAATACCTTGTCTTACTCAGA

AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTAGAAGGTCGTTTGACAGCCTCTGTTATCGCGGACCGTA

TCGGAATTACTCGTTCTGTTATTGTTAATGCTCTTCGTAAATTAGAATCAGCTGGTATTATTGAAAGTCGTTCGCTTGGT

ATGAAAGGCACTTACCTTAAAGTCCTTAACGAAGGTATCTACGACAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
codY	Lactococcus lactis subsp. lactis strain DGCC12653	64.591	98.467	0.636
codY	Bacillus subtilis subsp. subtilis str. 168	53.036	94.636	0.502

Detailed information NTG0482804