Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   IC803_RS04075 Genome accession   NZ_CP061474
Coordinates   806547..808907 (+) Length   786 a.a.
NCBI ID   WP_081208400.1    Uniprot ID   A0A1V9BA46
Organism   Geobacillus sp. 46C-IIa     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 801547..813907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC803_RS18080 - 802387..803037 (+) 651 Protein_802 YitT family protein -
  IC803_RS04055 (IC803_04055) cymR 803048..803464 (+) 417 WP_063165175.1 cysteine metabolism transcriptional regulator CymR -
  IC803_RS04060 (IC803_04060) - 803487..804629 (+) 1143 WP_081208406.1 cysteine desulfurase family protein -
  IC803_RS04065 (IC803_04065) mnmA 804644..805759 (+) 1116 WP_081208404.1 tRNA 2-thiouridine(34) synthase MnmA -
  IC803_RS04070 (IC803_04070) - 805867..806529 (+) 663 WP_081208402.1 tetratricopeptide repeat protein -
  IC803_RS04075 (IC803_04075) recD2 806547..808907 (+) 2361 WP_081208400.1 ATP-dependent RecD-like DNA helicase Machinery gene
  IC803_RS04080 (IC803_04080) - 808933..809406 (+) 474 WP_081208398.1 PRC-barrel domain-containing protein -
  IC803_RS04085 (IC803_04085) - 809422..809613 (+) 192 WP_081208396.1 hypothetical protein -
  IC803_RS04090 (IC803_04090) - 809625..809759 (+) 135 WP_081208394.1 YrzQ family protein -
  IC803_RS04095 (IC803_04095) - 809887..810948 (+) 1062 WP_081208392.1 AI-2E family transporter -
  IC803_RS04100 (IC803_04100) alaS 811266..813902 (+) 2637 WP_081208390.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 86073.49 Da        Isoelectric Point: 4.9843

>NTDB_id=482555 IC803_RS04075 WP_081208400.1 806547..808907(+) (recD2) [Geobacillus sp. 46C-IIa]
MQEQQSLALDGRTFMKGTCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLNEGDVYVFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIHYLSSGLFKGIGKKTATAIVEALGENAIATILRDPEALRRVPKLTKQKAKQLYETLCAHEGL
EQTMIALAQLGFGPQLAMKIYQVYGEETMDIIHENPYQLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
LQEGHVYMKEEELIGRIAELLGGKENGAVDGQAIGQTLLMLSEEGKMIMEQNRCYLPSLYFAEKGIASNIQRLLRQTPPS
AFAESEFLLALGALEERLGMQYAPQQKEAIQQALSSPLFILTGGPGTGKTTVIKGIVELFAALNGLSLDPADYKSGEPFP
VLLAAPTGRAAKRMSEATGLPSATIHRLLGWNGAEGFSHDENEPIAGKLLVVDEVSMVDTWLANQLLKAVPDGMQVIFVG
DEDQLPSVGPGQVLKDLLESGVVPSVKLTEVYRQAEGSSIIGLAHAMKRGVVPADLTAPKADRSFIRCRAGQVADVVRQI
ADNARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQGLFNPPADGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGEV
VAIFYAKENTEKQDLLVVSFDGVEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSKQ
FLILCGEEEAFRFGVAQRGDGARRTALAEKLAAAAAPFVEGELPLEDANTGMENVTPYDFMGDEPS

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=482555 IC803_RS04075 WP_081208400.1 806547..808907(+) (recD2) [Geobacillus sp. 46C-IIa]
TTGCAAGAGCAGCAATCGCTCGCGCTCGATGGACGCACGTTTATGAAAGGAACGTGTTTGGCCGTCATTTTCCATAACGA
AGAAACGTTATATACGGTCGTCCGCATCCGTGTCGAAGAAACGAACGAAGCGGCTGCGGAGGAGGAAGTGGTCGTCACCG
GTTATTTTCCTCGTTTAAATGAGGGGGACGTGTACGTTTTTTATGGACAATTCCGCCAGCATCCGCGCTTTGGCCGCCAA
TATGCGGCCGAGCAGTTCCGCAAACAGCTTCCAAACACGAAAGAAGGAGTTATTCATTATTTGTCAAGCGGCTTGTTTAA
AGGAATCGGAAAAAAAACGGCGACAGCGATTGTGGAAGCGCTCGGCGAAAACGCGATCGCCACGATTTTGCGCGATCCGG
AGGCGCTTAGGCGCGTGCCGAAGCTGACGAAGCAAAAAGCGAAGCAATTGTATGAAACGCTCTGCGCCCACGAAGGGCTC
GAGCAGACGATGATCGCCCTCGCCCAGCTCGGCTTCGGCCCGCAGCTGGCGATGAAAATTTACCAAGTATACGGCGAAGA
GACGATGGACATCATTCATGAAAACCCGTACCAGCTCGTCGAAGACATTGAAGGGATCGGGTTTGGCCGCGCTGATGAGC
TTGGGCGGCAGCTCGGCATTTCCGGCAGCCACCCGGCTCGGCTGCGCGCCGCCTGCCTGTTTGTCCTTGAGCAGGCATGC
CTGCAAGAAGGGCACGTCTATATGAAAGAGGAAGAGCTCATCGGCCGCATTGCGGAGCTGCTTGGCGGAAAGGAAAACGG
CGCGGTCGATGGACAAGCCATCGGGCAGACGCTCCTCATGTTAAGCGAAGAAGGGAAGATGATCATGGAGCAAAACCGCT
GTTATCTTCCCTCGCTTTACTTCGCCGAAAAAGGGATCGCTTCAAACATTCAGCGGCTGCTTAGGCAAACGCCGCCGTCG
GCGTTTGCCGAGTCGGAGTTTTTGCTTGCGCTCGGGGCGCTTGAGGAGCGGCTCGGGATGCAATACGCGCCTCAGCAAAA
AGAGGCAATCCAACAGGCCCTTTCTTCGCCGCTCTTTATTTTGACCGGAGGTCCAGGAACCGGAAAAACAACGGTGATTA
AAGGCATTGTCGAGCTGTTTGCCGCCTTAAACGGTCTGTCGCTCGACCCTGCCGATTACAAAAGCGGTGAACCGTTTCCC
GTGCTGCTCGCCGCCCCGACCGGACGGGCGGCAAAGCGGATGAGCGAGGCGACGGGGCTGCCGTCGGCAACGATTCATCG
ACTGCTCGGCTGGAACGGGGCGGAAGGATTCAGCCACGATGAAAATGAGCCCATTGCCGGCAAGCTGCTTGTCGTCGATG
AAGTGTCGATGGTCGATACGTGGTTGGCCAATCAGCTGTTAAAAGCGGTGCCTGACGGAATGCAAGTCATCTTCGTTGGC
GACGAGGACCAGCTCCCATCGGTCGGTCCCGGGCAAGTGTTGAAAGATTTGCTTGAGTCGGGCGTCGTTCCATCGGTCAA
ATTGACCGAGGTGTACCGCCAAGCGGAAGGATCATCGATCATCGGGCTCGCCCATGCGATGAAGCGCGGCGTCGTGCCGG
CCGACTTGACCGCCCCGAAGGCGGATCGTTCGTTCATCCGTTGCCGCGCCGGACAAGTGGCTGATGTTGTGCGGCAAATT
GCCGACAACGCGCGCAACAAAGGGTTTTCCGTCAAGGACATTCAAGTGCTCGCTCCGATGTACCGCGGCCCGGCCGGCAT
CGATCAGCTGAACAAAGTGCTGCAAGGGCTGTTTAATCCGCCAGCTGACGGGAAACGGGAGCTTTCCGTCGGCGACGTTG
TGTACCGCGTCGGCGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAAGACAATGTGTTTAACGGCGATATCGGCGAAGTC
GTCGCCATTTTTTACGCCAAAGAAAATACGGAAAAGCAAGACTTGCTTGTTGTCTCGTTTGACGGCGTTGAAGTGACATA
CACAAGGCAAGATTTAGCGCAAATTACCCATGCGTATTGCTGCTCGGTCCATAAAGCGCAAGGGAGCGAGTTTCCGATCG
TCATTTTGCCTGTTGTCAAAAGCTATTACCGGATGTTGAAGCGGAATTTGTTGTATACGGCGGTGACAAGAAGCAAGCAG
TTTCTTATTTTATGCGGCGAAGAAGAAGCGTTCCGGTTTGGCGTTGCCCAACGCGGCGACGGAGCGCGCCGGACAGCGCT
CGCCGAAAAGCTGGCGGCTGCGGCTGCGCCGTTTGTCGAAGGTGAACTGCCGCTTGAGGATGCGAATACCGGGATGGAAA
ACGTTACGCCGTATGACTTTATGGGCGATGAGCCAAGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-725)

Helix-hairpin-helix domain (HHH_5)

(107-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9BA46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.724

100

0.606