Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   IC803_RS03980 Genome accession   NZ_CP061474
Coordinates   786847..789204 (+) Length   785 a.a.
NCBI ID   WP_081208644.1    Uniprot ID   -
Organism   Geobacillus sp. 46C-IIa     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 781847..794204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC803_RS03965 (IC803_03965) - 783081..783371 (+) 291 WP_081208426.1 post-transcriptional regulator -
  IC803_RS03970 (IC803_03970) secDF 783491..785743 (+) 2253 WP_081208424.1 protein translocase subunit SecDF -
  IC803_RS03975 (IC803_03975) - 785887..786789 (+) 903 WP_081208422.1 cation diffusion facilitator family transporter -
  IC803_RS03980 (IC803_03980) recJ 786847..789204 (+) 2358 WP_081208644.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  IC803_RS03985 (IC803_03985) - 789204..789716 (+) 513 WP_063165165.1 adenine phosphoribosyltransferase -
  IC803_RS03990 (IC803_03990) - 789857..792055 (+) 2199 WP_081208420.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  IC803_RS03995 (IC803_03995) dtd 792078..792536 (+) 459 WP_063165167.1 D-aminoacyl-tRNA deacylase -
  IC803_RS04000 (IC803_04000) - 792615..792788 (+) 174 WP_190304264.1 hypothetical protein -
  IC803_RS04005 (IC803_04005) ahpC 793148..793711 (+) 564 WP_020960702.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 86527.91 Da        Isoelectric Point: 5.5969

>NTDB_id=482554 IC803_RS03980 WP_081208644.1 786847..789204(+) (recJ) [Geobacillus sp. 46C-IIa]
MLKAKTRWEVDRPDEQTVKRLAEEAGIAPLMARLLVRRGVRTAAEAAAFLDPLGQPFHDPFLLDGMERAIQRLERAIDAG
ELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNVAAFRAAKERGVSVIVTVDNGIAAVNEIAAANEW
GLDVIVTDHHEPGPVLPEAYAIIHPKKPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLL
AAQGLEALRKTDRAGLRALWRQCRIDAASVNEQTVGFAIAPRLNAAGRLGGADPAVALLMTDDEDEAVRLAQEMDELNRE
RQQLVAQMAEEAAEMVRRQFPPEEHRVLVVAGEGWNPGVVGIVASKLVEQFYRPAVVLSVDREKGIAKGSARSIHGFDLF
SSLSQCRDILPHFGGHPMAAGMTLALDDVEELRGRLNAIAGRTLSDDDFTPPTFIDAACSVAELTLSAARSFERLAPFGV
GNPRPFLLIEEAAVETMRRVGANGAHMKAVFSQDGATVDAIGFGLGPLCEEIAPGARVSAVGELSVNEWNGLAKPQLALC
DVAVSGCQLFDARGCRDVRPLLERLPKEKRLLVLFRRETENRLDLAAFRDELHYVPSDEEAGALVIDGRYVVLLDLPPKL
GRLAALLGNGQPERIYAVFAQPEAQFFRTFPTRDHFKWFYAFLHKYRSFPLTERGGQLARARGWTEETVHFMAKVFLELE
FIREQNGVISLVRTPAKRDLHESPTYRRRRDELEVEHQLLYSTYEQLKRCLTEMTRSQTYEEANV

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=482554 IC803_RS03980 WP_081208644.1 786847..789204(+) (recJ) [Geobacillus sp. 46C-IIa]
ATGTTAAAAGCGAAAACGCGTTGGGAAGTTGATCGCCCGGACGAACAGACGGTGAAGCGGCTGGCCGAAGAAGCCGGCAT
CGCGCCGTTGATGGCAAGGCTTCTTGTTCGCCGCGGCGTGCGGACGGCGGCGGAAGCGGCCGCGTTTCTCGATCCGCTCG
GACAGCCGTTTCACGACCCGTTTTTGCTCGACGGGATGGAGCGGGCGATCCAGCGCTTAGAGCGGGCCATTGACGCCGGC
GAACTTGTGCTTGTCTATGGCGACTATGATGCCGATGGCGTCTGCAGTACGTCGGTGATGGTGAGCGCTCTGAAAGAGGC
GGGGGCGTCGGTTGAGTTCTACATTCCCAACCGCTTTACGGAAGGATACGGTCCGAATGTGGCGGCATTTCGCGCCGCGA
AAGAGCGGGGCGTTTCCGTTATTGTGACCGTCGACAACGGGATTGCCGCGGTCAATGAAATCGCTGCCGCTAACGAGTGG
GGACTTGATGTCATTGTGACCGACCACCATGAACCCGGTCCGGTGTTACCGGAGGCGTACGCGATCATTCATCCAAAAAA
GCCGGGAAGTACATATCCGTTTCGCGATTTAGCCGGCGTCGGCGTCGCATTTAAGGTGGCCCACGCATTGCTTGGGCGGG
TGCCGCGCCATTTGCTTGATTTGGTAGCGATCGGGACGATCGCCGACTTAGTGCCGCTCGTTGGAGAAAACCGCCTCCTT
GCCGCGCAAGGGCTTGAGGCGCTGCGCAAAACGGATCGCGCCGGGTTGCGCGCCCTTTGGCGGCAATGCCGCATTGATGC
GGCGTCAGTCAACGAGCAGACGGTCGGTTTTGCCATCGCGCCGCGGCTGAATGCGGCCGGCCGCCTCGGCGGCGCCGATC
CGGCTGTGGCGCTGCTAATGACAGACGATGAGGACGAAGCGGTTCGCTTGGCCCAAGAGATGGACGAGCTAAACCGTGAA
CGCCAGCAGCTTGTGGCGCAAATGGCTGAAGAAGCGGCGGAGATGGTGCGGCGCCAGTTTCCGCCCGAAGAGCATCGCGT
CCTCGTTGTCGCCGGTGAAGGATGGAATCCGGGGGTTGTCGGCATCGTTGCCTCGAAGCTTGTTGAGCAGTTTTACCGTC
CGGCAGTCGTGCTTTCGGTCGATCGGGAAAAAGGGATCGCCAAAGGCTCGGCTCGCAGCATCCACGGCTTTGACCTTTTT
TCCAGTCTGTCCCAATGTCGTGACATTTTGCCGCATTTTGGTGGCCATCCGATGGCGGCGGGAATGACCTTAGCGCTGGA
TGATGTGGAGGAATTGCGGGGGCGGTTGAACGCCATCGCCGGCAGGACGTTGTCAGACGACGATTTTACGCCGCCGACGT
TCATCGATGCTGCCTGCTCTGTTGCCGAGCTGACGCTGTCAGCCGCACGAAGCTTTGAGCGGCTCGCCCCGTTTGGCGTC
GGCAATCCGCGGCCTTTTCTGCTCATCGAGGAGGCGGCGGTTGAAACGATGCGTCGCGTCGGGGCGAACGGCGCCCATAT
GAAAGCCGTCTTTTCCCAAGACGGTGCAACGGTTGATGCCATTGGCTTTGGCCTCGGACCGCTCTGCGAGGAAATCGCTC
CAGGGGCGCGTGTTTCGGCTGTCGGAGAACTTTCGGTGAACGAATGGAACGGGCTGGCGAAGCCGCAGCTGGCATTGTGC
GATGTAGCGGTGAGCGGCTGCCAGCTGTTTGATGCCCGCGGCTGCCGCGACGTCCGCCCGCTTCTTGAGCGGCTGCCGAA
AGAGAAGCGGCTGCTCGTCTTGTTTCGCCGCGAAACCGAAAATCGCTTAGATTTGGCGGCATTTCGCGACGAACTTCATT
ATGTGCCAAGTGATGAAGAGGCGGGCGCCTTAGTGATTGACGGCCGCTATGTCGTGCTGCTTGACTTGCCGCCAAAGCTC
GGCCGGCTCGCCGCCCTGCTCGGCAACGGGCAGCCGGAGCGCATTTACGCGGTGTTCGCACAGCCGGAAGCGCAGTTTTT
CCGGACGTTTCCGACGCGCGACCATTTTAAATGGTTTTATGCTTTTTTGCATAAATACCGTTCGTTTCCGCTCACCGAGC
GGGGCGGGCAATTGGCGCGCGCCCGCGGCTGGACGGAAGAGACGGTTCATTTCATGGCGAAAGTGTTTTTAGAGCTTGAG
TTTATTCGCGAACAAAACGGCGTCATCTCACTCGTCCGTACACCGGCGAAGCGCGATTTGCATGAGTCGCCGACATACCG
ACGCCGACGGGATGAACTTGAGGTGGAACACCAGTTATTATATTCCACTTACGAGCAGTTGAAACGCTGTTTAACAGAAA
TGACACGTTCGCAAACGTACGAGGAGGCAAACGTATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(309-438)

RecJ OB domain (RecJ_OB)

(455-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.895

99.745

0.538