Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   F750_RS05605 Genome accession   NC_021055
Coordinates   1278368..1279741 (-) Length   457 a.a.
NCBI ID   WP_014157360.1    Uniprot ID   A0ABZ1JXK7
Organism   Streptomyces sp. PAMC 26508     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1273368..1284741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F750_RS05580 (F750_1258) - 1273674..1273970 (-) 297 WP_014157365.1 hypothetical protein -
  F750_RS05585 (F750_1259) - 1273978..1274412 (-) 435 WP_030124304.1 DUF948 domain-containing protein -
  F750_RS05590 (F750_1260) - 1274655..1276838 (+) 2184 WP_015576390.1 ATP-binding protein -
  F750_RS05595 (F750_1261) rpsD 1276853..1277467 (-) 615 WP_014157362.1 30S ribosomal protein S4 -
  F750_RS05600 (F750_1262) - 1277656..1278357 (+) 702 WP_015576391.1 DUF2470 domain-containing protein -
  F750_RS05605 (F750_1263) rarA 1278368..1279741 (-) 1374 WP_014157360.1 replication-associated recombination protein A Machinery gene
  F750_RS05610 (F750_1264) - 1279786..1280421 (-) 636 WP_015576392.1 vitamin K epoxide reductase family protein -
  F750_RS05615 (F750_1265) hisS 1280868..1282130 (-) 1263 WP_014157358.1 histidine--tRNA ligase -
  F750_RS05620 (F750_1266) - 1282146..1282832 (-) 687 WP_015576393.1 MBL fold metallo-hydrolase -
  F750_RS05625 (F750_1267) - 1282981..1283769 (+) 789 WP_015576394.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48595.00 Da        Isoelectric Point: 6.1515

>NTDB_id=48255 F750_RS05605 WP_014157360.1 1278368..1279741(-) (rarA) [Streptomyces sp. PAMC 26508]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGGGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLEPLGDDDLRALLRRAVTDERGLAGAVTLPEDAEAHLLRIAGGDARRVLTALEAAAGAALSKHEDE
ITLETLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQEDVRRGLAGPVPAHLRDGHYKGAAKLGHAQGYVY
PHDVPGGIAAQEYAPDAVRGRRYYEPTRYGAEARYADVAERVRERLGRGEPSGPAAS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=48255 F750_RS05605 WP_014157360.1 1278368..1279741(-) (rarA) [Streptomyces sp. PAMC 26508]
GTGGAGCCCGACCTCTTTACCGCAGCAGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGTCCCCGCACCCTGGACGAGGTCGTCGGCCAGCAGCATCTGCTCAAGCCGGGCTCCCCGCTCCGCCGCCTCGTGGGTG
AGGGCGGCGGAGGACCCGCCGGACCGTCGTCGGTGATCCTCTGGGGCCCGCCCGGCACCGGGAAGACGACCCTCGCATAC
GTGGTCAGCAAGGCCACCAACAAGCGCTTCGTGGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCGGTCAT
CGAGGGCGCGCGCCGCGCCACCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGGTTCTCCAAGG
CCCAGCAGGACTCGCTGCTGCCGGCCGTGGAGAACCGCTGGGTCACGCTCATCGCGGCCACCACGGAGAATCCGTACTTC
TCGATCATCTCCCCCCTGCTGTCGCGCTCCCTGCTGCTCACGCTGGAGCCCCTCGGCGACGACGACCTGCGGGCCCTGCT
GCGCCGGGCCGTGACCGACGAGCGGGGGCTGGCCGGAGCCGTCACCCTTCCCGAGGACGCCGAGGCGCACCTGCTGCGGA
TCGCGGGGGGAGACGCCCGGCGGGTGCTGACCGCGCTCGAGGCCGCCGCGGGGGCGGCACTCTCCAAGCACGAGGACGAG
ATCACGCTGGAGACGCTCGAGGAGACCGTCGACCGCGCCGCCGTGAAGTACGACCGTGACGGCGACCAGCACTACGACGT
GGCGAGCGCCCTGATCAAGTCGATCCGCGGATCCGACGTGGACGCCGCACTCCACTACCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCGCGCTTCATCGCGAGGCGGCTGATGATCTCCGCCAGCGAGGACATCGGGCTCGCCGACCCGACGGCGCTG
CCCACAGCGGTGGCGGCGGCCCAGGCGGTCGCGATGATCGGCTTCCCCGAGGCGGCGCTCACCCTCAGCCATGCCACGAT
CGCGCTGGCGCTCGCCCCCAAGTCGAACGCGGCGACGCTGGCGATCTCCGCCGCGCAGGAGGACGTGCGCCGGGGACTGG
CGGGCCCGGTCCCGGCCCACCTGCGCGACGGCCACTACAAGGGCGCCGCCAAGCTCGGCCACGCCCAGGGGTACGTCTAC
CCGCACGACGTCCCGGGCGGGATCGCCGCCCAGGAGTACGCCCCGGACGCCGTCCGCGGCAGGCGCTACTACGAACCCAC
CCGGTACGGCGCGGAGGCGCGCTACGCCGACGTGGCGGAGCGGGTCCGTGAGCGGCTCGGCCGCGGGGAGCCGAGCGGTC
CCGCGGCCTCGTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.823

93.873

0.411

Multiple sequence alignment