Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   IC804_RS04700 Genome accession   NZ_CP061473
Coordinates   919757..922120 (-) Length   787 a.a.
NCBI ID   WP_008881020.1    Uniprot ID   A0A0Q0ZBY2
Organism   Geobacillus sp. 47C-IIb     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 914757..927120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC804_RS04675 (IC804_04675) alaS 914768..917404 (-) 2637 WP_008881015.1 alanine--tRNA ligase -
  IC804_RS04680 (IC804_04680) - 917721..918782 (-) 1062 WP_008881016.1 AI-2E family transporter -
  IC804_RS04685 (IC804_04685) - 918905..919039 (-) 135 WP_008881017.1 YrzQ family protein -
  IC804_RS04690 (IC804_04690) - 919051..919242 (-) 192 WP_008881018.1 hypothetical protein -
  IC804_RS04695 (IC804_04695) - 919258..919731 (-) 474 WP_008881019.1 PRC-barrel domain-containing protein -
  IC804_RS04700 (IC804_04700) recD2 919757..922120 (-) 2364 WP_008881020.1 ATP-dependent RecD-like DNA helicase Machinery gene
  IC804_RS04705 (IC804_04705) - 922138..922800 (-) 663 WP_008881021.1 tetratricopeptide repeat protein -
  IC804_RS04710 (IC804_04710) mnmA 922909..924024 (-) 1116 WP_081156967.1 tRNA 2-thiouridine(34) synthase MnmA -
  IC804_RS04715 (IC804_04715) - 924038..925180 (-) 1143 WP_011887880.1 cysteine desulfurase family protein -
  IC804_RS04720 (IC804_04720) cymR 925203..925619 (-) 417 WP_008881024.1 cysteine metabolism transcriptional regulator CymR -
  IC804_RS04725 (IC804_04725) - 925619..926275 (-) 657 WP_081156965.1 YitT family protein -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 86348.70 Da        Isoelectric Point: 4.9895

>NTDB_id=482504 IC804_RS04700 WP_008881020.1 919757..922120(-) (recD2) [Geobacillus sp. 47C-IIb]
MQEQQSLALDGRTFIKGVCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIDYLSSGLFKGIGKKTATAIVDALGENAIAAILRDPGALERVPKLTKQKAKQLYETLCAHEGL
EQTMIALAQLGFGPQLAMKIYQVYGEETMDIIHENPYKLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
LQEGHVYMKKEELVSRIGELLGGRSNGAVDGQAIEQTLLMLSEEGKMIAEQGRYYLPSLYFAEKGIASNIRRLLGQTPPS
ASFPESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLFILTGGPGTGKTTVIKGIVELFAVLNGISLSPDDYKNGEPF
PVLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSHDENEPIAGKLLVVDEVSMVDTWLANHLLKAVPNGMQVIFV
GDEDQLPSVGPGQVLKDLLESGVIPSVRLTEVYRQAEGSSIIELAHEMKRGNVPADLTAPKADRSFIRCRAGQVASVVRQ
IAENARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQELFNPPTDGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGE
VVAIFYAKENTEKQDLLVVSFDGIEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFRFGVAQRGDGARQTALAEKLAASTALFVEGELPLEDANIGMENVTPYDFMDDGSS

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=482504 IC804_RS04700 WP_008881020.1 919757..922120(-) (recD2) [Geobacillus sp. 47C-IIb]
TTGCAAGAGCAGCAATCGCTTGCGCTGGACGGCCGCACGTTTATTAAAGGGGTGTGTTTGGCCGTCATTTTTCATAACGA
GGAGACGTTGTATACCGTTGTCCGTATCCGCGTCGAAGAAACGAATGAAGCGGCTGCGGAGGAAGAAGTGGTCGTCACCG
GCTATTTTCCACGTTTAAATGAAGGGGACGTGTACATCTTTTACGGGCAATTCCGCCAACATCCGCGCTTTGGCCGCCAG
TATGCGGCCGAGCAGTTCCGCAAACAGCTTCCGAACACGAAAGAAGGAGTCATCGATTATTTGTCGAGCGGCTTGTTTAA
GGGGATCGGCAAAAAAACAGCGACAGCGATTGTCGATGCGCTTGGTGAAAACGCGATCGCCGCCATTTTGCGTGATCCAG
GAGCGCTCGAACGCGTGCCCAAGCTGACGAAACAAAAAGCGAAGCAATTGTACGAAACGCTCTGCGCCCACGAAGGGCTC
GAACAGACGATGATCGCCCTCGCTCAGCTCGGTTTTGGTCCACAGCTGGCAATGAAAATTTACCAAGTATACGGCGAAGA
GACAATGGACATCATTCATGAAAACCCGTACAAGCTCGTCGAAGATATTGAAGGGATCGGTTTTGGTCGCGCCGATGAGC
TCGGGCGGCAGCTCGGCATTTCCGGCAGTCATCCAGCCCGGCTGCGCGCCGCTTGTCTGTTTGTCCTTGAGCAGGCATGC
TTGCAAGAAGGGCACGTCTACATGAAGAAAGAAGAGCTCGTCAGCCGCATTGGGGAGCTGCTTGGCGGAAGGTCGAACGG
AGCGGTTGATGGACAAGCCATCGAACAGACGCTCCTTATGTTAAGCGAAGAAGGAAAGATGATCGCGGAACAAGGCCGCT
ATTATCTTCCTTCGCTTTACTTCGCCGAAAAAGGGATCGCTTCTAACATTCGGCGGTTGCTCGGGCAAACGCCACCATCG
GCCTCATTTCCGGAGTCGGAGTTTTTGCTGGCGCTCGGGGCGCTTGAAGAACGACTCGGGATGCAATATGCTCCGCAGCA
AAAAGAAGCGATTCAACGGGCGCTGTCTTCGCCGCTCTTTATTTTGACGGGAGGTCCAGGAACAGGAAAAACAACGGTCA
TTAAAGGAATTGTTGAGCTGTTTGCGGTTCTAAATGGCATATCACTTTCCCCCGACGATTACAAAAACGGTGAACCGTTT
CCTGTGCTGCTCGCTGCTCCGACTGGACGGGCTGCAAAGCGGATGAGTGAGGCGACCGGGCTGCCGGCGGCGACGATTCA
CCGGCTGCTCGGCTGGAATGGAGCGGAAGGGTTCAGCCACGATGAAAATGAGCCGATTGCCGGTAAGCTGCTTGTCGTCG
ATGAGGTGTCGATGGTCGATACGTGGTTGGCTAATCACCTGTTAAAAGCGGTGCCTAATGGGATGCAAGTCATCTTCGTT
GGCGATGAAGACCAGCTTCCATCCGTCGGGCCAGGGCAAGTGTTGAAAGATTTGCTCGAGTCGGGTGTTATCCCGTCCGT
GCGGCTGACCGAGGTGTACCGCCAGGCGGAAGGGTCATCGATTATCGAGCTCGCCCATGAGATGAAGCGTGGGAACGTGC
CGGCCGACTTGACTGCCCCGAAGGCGGATCGTTCGTTCATCCGCTGCCGCGCCGGACAAGTGGCTAGTGTCGTGCGTCAA
ATCGCCGAAAATGCGCGTAACAAAGGGTTTTCCGTCAAAGACATTCAAGTGCTCGCTCCGATGTACCGCGGCCCAGCCGG
TATCGATCAGCTAAACAAAGTGCTGCAGGAGCTGTTTAATCCACCAACGGATGGGAAGCGAGAACTTTCCGTTGGCGACG
TAGTGTATCGCGTCGGCGATAAAGTGCTCCAGCTCGTCAATCAACCGGAAGACAACGTGTTTAACGGCGATATCGGTGAA
GTCGTGGCCATTTTTTATGCCAAAGAAAATACAGAAAAGCAAGATTTGCTCGTCGTCTCATTTGACGGCATTGAAGTGAC
GTATACAAGGCAAGATTTAGCGCAAATTACCCATGCATATTGCTGCTCCGTCCATAAGGCGCAAGGGAGCGAGTTTCCGA
TTGTCATTTTGCCTGTTGTCAAAAGTTATTACCGGATGTTGAAGCGGAATTTGTTGTATACGGCGGTGACAAGAAGCAAA
CAATTTCTGATTTTATGCGGGGAGGAAGAAGCATTCCGGTTTGGTGTTGCCCAGCGGGGCGACGGAGCGCGCCAGACGGC
GCTTGCAGAAAAGTTGGCGGCTTCGACTGCGCTGTTTGTCGAAGGGGAACTGCCGCTTGAGGATGCGAACATCGGGATGG
AAAACGTTACGCCGTATGACTTTATGGACGATGGGTCAAGCTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

AAA domain (AAA_30)

(342-549)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

Helix-hairpin-helix domain (HHH_5)

(107-153)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0ZBY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.925

100

0.606