Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   J7U00_RS01030 Genome accession   NZ_CP072431
Coordinates   183024..183317 (+) Length   97 a.a.
NCBI ID   WP_011226625.1    Uniprot ID   Q5M2G2
Organism   Streptococcus thermophilus strain S24745     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 178024..188317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U00_RS01005 (J7U00_01020) - 179975..180337 (+) 363 WP_014608746.1 DUF1033 family protein -
  J7U00_RS01010 (J7U00_01025) comGA/cglA/cilD 180418..181359 (+) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  J7U00_RS01015 (J7U00_01030) comGB 181241..182341 (+) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  J7U00_RS01020 (J7U00_01035) comGC 182338..182664 (+) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  J7U00_RS01025 (J7U00_01040) comGD 182624..183052 (+) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7U00_RS01030 (J7U00_01045) comGE 183024..183317 (+) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  J7U00_RS01035 (J7U00_01050) comGF 183301..183738 (+) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7U00_RS01040 (J7U00_01055) comGG 183716..184033 (+) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG Machinery gene
  J7U00_RS01045 (J7U00_01060) comGH 184078..185034 (+) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  J7U00_RS01050 (J7U00_01065) - 185090..186283 (+) 1194 WP_014608740.1 acetate kinase -
  J7U00_RS01055 (J7U00_01070) - 186532..186729 (+) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  J7U00_RS01060 - 186741..187016 (+) 276 WP_011681681.1 hypothetical protein -
  J7U00_RS01065 - 187060..187398 (+) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  J7U00_RS01070 (J7U00_01080) - 187472..187915 (+) 444 WP_011681680.1 hypothetical protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10844.74 Da        Isoelectric Point: 10.4561

>NTDB_id=482441 J7U00_RS01030 WP_011226625.1 183024..183317(+) (comGE) [Streptococcus thermophilus strain S24745]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMADNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=482441 J7U00_RS01030 WP_011226625.1 183024..183317(+) (comGE) [Streptococcus thermophilus strain S24745]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

43.299

100

0.433
  comGE Streptococcus mutans UA159

43.299

100

0.433
  comGE Lactococcus lactis subsp. cremoris KW2

36.082

100

0.361