Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J7U22_RS09380 Genome accession   NZ_CP072428
Coordinates   1784463..1785731 (-) Length   422 a.a.
NCBI ID   WP_372588822.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24749     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1779463..1790731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U22_RS09345 (J7U22_09355) - 1779767..1781308 (+) 1542 WP_372588820.1 ATP-binding cassette domain-containing protein -
  J7U22_RS09350 - 1781441..1781656 (+) 216 WP_372588821.1 hypothetical protein -
  J7U22_RS09355 (J7U22_09360) - 1781702..1782679 (+) 978 WP_011226670.1 replication initiation protein -
  J7U22_RS09360 (J7U22_09365) - 1782691..1782879 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  J7U22_RS09365 (J7U22_09370) - 1782881..1784020 (+) 1140 WP_207559857.1 site-specific integrase -
  J7U22_RS09380 (J7U22_09385) rarA 1784463..1785731 (-) 1269 WP_372588822.1 replication-associated recombination protein A Machinery gene
  J7U22_RS09385 (J7U22_09390) rpmB 1785902..1786090 (+) 189 WP_372588823.1 50S ribosomal protein L28 -
  J7U22_RS09390 (J7U22_09395) - 1786217..1786483 (+) 267 WP_372588824.1 IreB family regulatory phosphoprotein -
  J7U22_RS09395 (J7U22_09400) ruvX 1786483..1786902 (+) 420 WP_002952187.1 Holliday junction resolvase RuvX -
  J7U22_RS09400 (J7U22_09405) - 1787011..1787316 (+) 306 WP_002952188.1 DUF1292 domain-containing protein -
  J7U22_RS09405 (J7U22_09410) - 1787529..1789186 (+) 1658 Protein_1794 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46370.84 Da        Isoelectric Point: 6.7874

>NTDB_id=482224 J7U22_RS09380 WP_372588822.1 1784463..1785731(-) (rarA) [Streptococcus thermophilus strain S24749]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIHRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPGLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=482224 J7U22_RS09380 WP_372588822.1 1784463..1785731(-) (rarA) [Streptococcus thermophilus strain S24749]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCACCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACCTTAGATATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTGGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTCAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.427

99.289

0.59