Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EHE19_RS06380 Genome accession   NZ_CP061336
Coordinates   1472363..1474186 (+) Length   607 a.a.
NCBI ID   WP_244648385.1    Uniprot ID   -
Organism   Ruminiclostridium herbifermentans strain MA18     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1467363..1479186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHE19_RS06370 (EHE19_006370) - 1467893..1469059 (+) 1167 WP_137698504.1 copper amine oxidase N-terminal domain-containing protein -
  EHE19_RS06375 (EHE19_006375) - 1469773..1472133 (+) 2361 WP_137698503.1 ABC transporter ATP-binding protein -
  EHE19_RS06380 (EHE19_006380) rcrQ 1472363..1474186 (+) 1824 WP_244648385.1 ABC transporter ATP-binding protein Regulator
  EHE19_RS06385 (EHE19_006385) - 1474463..1474909 (+) 447 WP_137698501.1 hypothetical protein -
  EHE19_RS06390 (EHE19_006390) - 1476195..1477523 (-) 1329 WP_137698500.1 DUF1015 domain-containing protein -
  EHE19_RS06395 (EHE19_006395) - 1478414..1478947 (+) 534 WP_137698499.1 PRC-barrel domain-containing protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 67272.12 Da        Isoelectric Point: 6.7372

>NTDB_id=481921 EHE19_RS06380 WP_244648385.1 1472363..1474186(+) (rcrQ) [Ruminiclostridium herbifermentans strain MA18]
MGGPMGGPMGAQVEKAKNFKKTIRKLLAYMKPYLPAIIVALVLAIGSAAFSIAGPKILGNATTKIFEGLIGKVSGESTGI
DFDYIGEKLLFLVGLYAISSLFAFIQGYTMAGVAQKVSYRLRKEISEKINRLPLKYFDKMTHGEVLSRVTNDVDTVSQTL
NQSLSQIITSITMLIGILIMMLSISWLMTLASVLILPLSVVFISLIVKKSQKYFKSQQEYLGHVNGHVEEIFSGHNIMKA
FNGEKKAVETFDQLNNTLYTSAWKSQFLSGMMMPIIFFVGNLGYVMVSILGGWLAIKKTIEVGDILAFVQYVRQFSQPLG
QVAQVANILQSTAAAAERVFEFLEEQEETEDIEKPVTIDGIKGEVEFKNVHFGYNPESIIINNFSAHIKPGQRVAIVGPT
GAGKTTMVKLLMRFYELNSGDIFIDGNNIVDFKRGELRDLFGMVLQDTWLFNGTIMDNIRYGRIDATDEEVIKAAKAAHA
HHFIKTLPDGYNMVLNEEASNVSQGQKQLLTIARAILSDPKILILDEATSSVDTRTEVLIQKAMENLMKNRTSFIIAHRL
STIRDADLILVMKDGDIVEQGTHEELVSAKGFYASLYNSQFETNEAS

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=481921 EHE19_RS06380 WP_244648385.1 1472363..1474186(+) (rcrQ) [Ruminiclostridium herbifermentans strain MA18]
ATGGGTGGACCAATGGGAGGACCTATGGGCGCTCAGGTTGAAAAAGCGAAAAATTTCAAAAAAACAATTAGAAAACTACT
TGCTTATATGAAACCATATTTGCCAGCTATTATAGTTGCTTTAGTATTAGCAATTGGCAGTGCTGCTTTTTCAATAGCTG
GTCCCAAAATTCTTGGTAATGCAACTACAAAGATTTTTGAAGGTTTGATTGGCAAGGTTAGTGGAGAGAGTACTGGTATA
GACTTTGATTATATAGGAGAAAAGTTATTATTTTTGGTAGGATTATATGCCATCAGTTCATTATTTGCATTTATTCAAGG
GTACACAATGGCAGGTGTTGCGCAAAAGGTATCCTACAGGTTGAGAAAAGAAATTTCTGAAAAAATTAACCGTTTACCTC
TTAAATATTTTGATAAAATGACACATGGTGAAGTTTTATCGAGGGTTACAAATGATGTTGATACAGTTAGTCAAACACTT
AATCAAAGCTTGTCACAGATTATTACATCCATAACAATGCTGATAGGAATATTGATAATGATGCTTTCTATTAGTTGGTT
GATGACTTTGGCATCAGTATTAATTCTTCCATTATCAGTAGTTTTTATATCATTAATTGTTAAGAAATCTCAGAAATATT
TTAAATCTCAGCAGGAGTATCTAGGACATGTAAATGGCCATGTGGAGGAAATATTTAGCGGACATAACATAATGAAAGCT
TTTAATGGAGAGAAAAAGGCAGTTGAAACCTTTGACCAGCTAAATAATACCCTTTATACATCTGCATGGAAATCTCAGTT
TTTGTCAGGAATGATGATGCCTATAATTTTCTTTGTAGGCAATCTTGGATATGTTATGGTATCAATTCTAGGAGGCTGGC
TTGCAATTAAAAAAACTATAGAGGTTGGAGATATTTTGGCATTTGTTCAATATGTAAGGCAGTTTTCACAGCCTCTTGGT
CAGGTGGCACAGGTTGCTAATATATTACAGTCAACAGCGGCGGCAGCAGAAAGAGTATTTGAGTTTTTAGAAGAACAAGA
GGAAACAGAGGATATAGAGAAGCCTGTTACCATTGATGGAATAAAAGGAGAAGTAGAATTTAAGAATGTTCACTTTGGAT
ATAATCCTGAAAGCATAATAATAAATAATTTTTCAGCTCATATAAAGCCTGGACAAAGAGTAGCAATTGTAGGCCCTACA
GGTGCTGGAAAGACAACAATGGTAAAACTTTTAATGCGTTTCTACGAACTGAATAGTGGAGACATCTTTATTGATGGTAA
TAACATTGTTGATTTCAAGAGAGGCGAACTGCGAGATTTATTTGGTATGGTGCTACAGGATACATGGCTGTTTAATGGAA
CAATTATGGACAATATTAGGTATGGCAGAATTGATGCTACAGATGAAGAGGTCATAAAGGCTGCAAAGGCTGCTCATGCT
CACCATTTCATAAAAACATTACCAGATGGCTATAATATGGTGTTAAATGAAGAGGCAAGTAATGTATCACAAGGTCAAAA
GCAGCTTTTAACAATAGCTCGTGCTATTTTGTCAGACCCCAAAATTCTAATTCTTGACGAAGCAACAAGTTCAGTAGACA
CTCGTACAGAGGTTCTTATTCAGAAGGCCATGGAAAACTTGATGAAAAATAGAACAAGCTTTATAATAGCGCACAGATTA
TCAACAATAAGAGATGCTGATTTGATATTAGTTATGAAGGATGGGGATATTGTAGAGCAAGGTACGCATGAAGAATTAGT
ATCAGCTAAGGGTTTCTATGCTTCATTGTACAACAGCCAGTTTGAAACTAATGAGGCTTCATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(382-530)

ABC transporter transmembrane region (ABC_membrane)

(37-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.195

96.54

0.494