Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   J6F34_RS06300 Genome accession   NZ_CP072275
Coordinates   1323983..1325740 (+) Length   585 a.a.
NCBI ID   WP_045543914.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain KSK7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1318983..1330740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6F34_RS06280 (J6F34_06280) - 1319882..1320751 (+) 870 WP_045543911.1 PhzF family phenazine biosynthesis protein -
  J6F34_RS06285 (J6F34_06285) - 1320806..1321585 (-) 780 WP_000718711.1 ferredoxin--NADP reductase -
  J6F34_RS06290 (J6F34_06290) tsaA 1321690..1322418 (+) 729 WP_079395662.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  J6F34_RS06295 (J6F34_06295) - 1322428..1323696 (-) 1269 WP_045543913.1 MgtC/SapB family protein -
  J6F34_RS06300 (J6F34_06300) pilB 1323983..1325740 (+) 1758 WP_045543914.1 GspE/PulE family protein Machinery gene
  J6F34_RS06305 (J6F34_06305) - 1325822..1326181 (+) 360 WP_000783089.1 NirD/YgiW/YdeI family stress tolerance protein -
  J6F34_RS06310 (J6F34_06310) - 1326289..1326951 (+) 663 WP_001221456.1 response regulator transcription factor -
  J6F34_RS06315 (J6F34_06315) - 1326948..1328306 (+) 1359 WP_001257350.1 ATP-binding protein -
  J6F34_RS06320 (J6F34_06320) hemP 1328372..1328542 (-) 171 WP_000993415.1 hemin uptake protein HemP -
  J6F34_RS06325 (J6F34_06325) - 1328679..1329578 (+) 900 WP_001125744.1 NUDIX domain-containing protein -
  J6F34_RS06330 (J6F34_06330) - 1329600..1330151 (-) 552 WP_045543915.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66859.62 Da        Isoelectric Point: 7.0338

>NTDB_id=481329 J6F34_RS06300 WP_045543914.1 1323983..1325740(+) (pilB) [Acinetobacter baumannii strain KSK7]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRTQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKDNGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPHCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGARKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=481329 J6F34_RS06300 WP_045543914.1 1323983..1325740(+) (pilB) [Acinetobacter baumannii strain KSK7]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATTTAA
AAGACCAACATCATGTACAAGCACATTTAAGTTTAAACCGTCTGTGCCAATGGTTTGCAGATCGGACGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGAATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGTGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAGGCGCTTTTACA
ACTTGGCGATAGCCAAAATCCTGATGCCAATGATCAGCATATTGTGAAATTGGTCGACTGGATTTTGCAATTTGCATTTG
AACAGAGCGCCAGTGACATTCATATGGAACCGCGTAAAGACAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACCCTGACTGCAGTGATTTCTCGGATTAAAATTTTAGGGCGGCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGATTAAAAACACGTACGCCGAAAGGACAAGAAACCGAACTACGTCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTGTTAGTACGTTCCTTTCAGCAATTGGGTTTT
GACCAGTCTTTATTACAACAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTAGTTACGGGGCCAACAGGTTC
TGGTAAAACCACAACGTTATATTCTTCTTTAAAGCAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGATATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAAGCTGC
ACTCACAGGCCATTTAGTATTATCAACTTTACACACCAATGATGCGCCGTCTAGTTTGACCCGTTTACATGATTTAGGCG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTGGCACAGCGCTTAGTGCGTAAGCTTTGCCCGCACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGTCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTATTGCGAGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(209-474)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.162

100

0.376