Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IAU66_RS08430 Genome accession   NZ_CP061168
Coordinates   1689435..1690214 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain T-5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1684435..1695214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS08410 trmFO 1685122..1686429 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IAU66_RS08415 xerC 1686499..1687416 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  IAU66_RS08420 hslV 1687432..1687977 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  IAU66_RS08425 hslU 1687994..1689397 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  IAU66_RS08430 codY 1689435..1690214 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IAU66_RS08435 flgB 1690568..1690957 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  IAU66_RS08440 flgC 1690957..1691409 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  IAU66_RS08445 fliE 1691420..1691740 (+) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  IAU66_RS08450 fliF 1691783..1693393 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  IAU66_RS08455 fliG 1693406..1694422 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  IAU66_RS08460 fliH 1694415..1695170 (+) 756 WP_003154255.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=481066 IAU66_RS08430 WP_003154263.1 1689435..1690214(+) (codY) [Bacillus amyloliquefaciens strain T-5]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=481066 IAU66_RS08430 WP_003154263.1 1689435..1690214(+) (codY) [Bacillus amyloliquefaciens strain T-5]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAAATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471