Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J6M00_RS11845 Genome accession   NZ_CP072188
Coordinates   2429663..2430940 (+) Length   425 a.a.
NCBI ID   WP_109474906.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190121E1-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2424663..2435940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6M00_RS11825 (J6M00_11820) - 2426442..2427119 (-) 678 WP_004917711.1 DedA family protein -
  J6M00_RS11830 (J6M00_11825) prfB 2427197..2428309 (-) 1113 WP_064970451.1 peptide chain release factor 2 -
  J6M00_RS11835 (J6M00_11830) lgt 2428470..2429321 (-) 852 WP_214244216.1 prolipoprotein diacylglyceryl transferase -
  J6M00_RS11840 (J6M00_11835) yidD 2429329..2429583 (-) 255 WP_064969823.1 membrane protein insertion efficiency factor YidD -
  J6M00_RS11845 (J6M00_11840) rarA 2429663..2430940 (+) 1278 WP_109474906.1 replication-associated recombination protein A Machinery gene
  J6M00_RS11850 (J6M00_11845) - 2430937..2431548 (-) 612 WP_109474907.1 L-threonylcarbamoyladenylate synthase -
  J6M00_RS11855 (J6M00_11850) - 2431532..2432338 (-) 807 WP_109474908.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  J6M00_RS11860 (J6M00_11855) - 2432367..2432987 (-) 621 WP_109474909.1 CoA pyrophosphatase -
  J6M00_RS11865 (J6M00_11860) - 2432991..2433683 (-) 693 WP_013447221.1 TrkA family potassium uptake protein -
  J6M00_RS11870 (J6M00_11865) - 2433691..2435439 (-) 1749 WP_214244218.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47490.18 Da        Isoelectric Point: 6.7064

>NTDB_id=481047 J6M00_RS11845 WP_109474906.1 2429663..2430940(+) (rarA) [Riemerella anatipestifer strain 20190121E1-3]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDDAKKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVVLIGATTENPSFEVVSALLSRSQVYVLKPLSYE
KLEELATIAVARFNQDENTDFVIEDNQGFIQYSGGDARKLINSVEWVLNQFKGSGQNQLSSEAILKILQETVPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTIANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEAMALAKKTTHLPVPLHLRNAPTKLMKGLDYGKDYRYAHAYEENFVPQEFLPEELSGVS
FYRSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=481047 J6M00_RS11845 WP_109474906.1 2429663..2430940(+) (rarA) [Riemerella anatipestifer strain 20190121E1-3]
TTGAATTCAAATATTCCTTTAGCAGAGAAATTACGCCCTAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGACGGAACGATAAGAAAAATGTTGGATACTGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTAAAA
GAGGTAAGAGAAGTGATAGATGATGCCAAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTGTTTATAGATGAAAT
TCATAGATTTAACAAATCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGTTGGGTGGTTTTGATAGGAGCTACTA
CTGAAAATCCTAGTTTTGAAGTGGTTTCGGCATTGTTATCTCGTTCTCAAGTTTATGTTTTGAAACCATTGAGCTATGAA
AAATTGGAAGAATTGGCCACCATTGCGGTCGCTCGTTTCAATCAAGATGAAAATACAGATTTTGTTATCGAAGATAATCA
AGGTTTTATACAATATTCGGGTGGTGATGCTAGAAAACTCATCAATTCGGTAGAGTGGGTGCTTAATCAGTTTAAAGGCT
CTGGACAAAATCAGTTATCTAGTGAGGCTATTCTGAAAATTTTACAAGAAACTGTACCTGTTTATGATAAAAATGGAGAA
CAACATTATGATGTAATTTCAGCTTTTATTAAATCTATTAGAGGGAGCGATGTTAATGCTGCTTTGTATTGGTTGGGTAG
AATGCTTGTAGGAGGCGAAGATATTAAATTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGTTTGGCTA
ATCCTAACGCTCTCACAATAGCTAATAGTTGTTTTCAGTCGGTTAATGTTATAGGTTATCCCGAATCTCGTATTATCCTT
AGTGAATGTGTAATTTATCTAGCAGCTTCACCTAAGAGCAACTCGGCGTATCAAGCCATCAATGAGGCAATGGCGTTGGC
GAAAAAAACAACTCATTTACCTGTGCCGTTACACCTAAGAAACGCTCCCACAAAACTGATGAAAGGGCTAGATTATGGTA
AAGATTACCGTTACGCTCACGCTTATGAGGAAAATTTTGTGCCACAAGAATTTCTTCCTGAAGAATTATCAGGAGTTTCT
TTTTATCGTTCAGGAGATAATGCTACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAGTGGGGTGATAAATACTAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)

AAA C-terminal domain (AAA_assoc_2)

(189-254)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.447

94.824

0.384