Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J6M13_RS04130 Genome accession   NZ_CP072186
Coordinates   890159..890812 (-) Length   217 a.a.
NCBI ID   WP_004918078.1    Uniprot ID   E4TBT8
Organism   Riemerella anatipestifer strain 20190403E1-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 885159..895812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6M13_RS04110 (J6M13_04115) - 886185..887840 (-) 1656 WP_004918074.1 ribonucleoside-diphosphate reductase subunit alpha -
  J6M13_RS04115 (J6M13_04120) - 887888..888862 (-) 975 WP_004918076.1 ribonucleotide-diphosphate reductase subunit beta -
  J6M13_RS04120 (J6M13_04125) - 888944..889084 (+) 141 WP_015345427.1 hypothetical protein -
  J6M13_RS04125 (J6M13_04130) - 889209..890087 (+) 879 WP_004918508.1 IS982-like element ISRa1 family transposase -
  J6M13_RS04130 (J6M13_04135) comF 890159..890812 (-) 654 WP_004918078.1 ComF family protein Machinery gene
  J6M13_RS04140 (J6M13_04145) - 891034..891585 (-) 552 WP_004918080.1 hypothetical protein -
  J6M13_RS04145 (J6M13_04150) - 891640..892290 (-) 651 WP_004918082.1 HD domain-containing protein -
  J6M13_RS04150 (J6M13_04155) gdhA 892422..893780 (-) 1359 WP_014938006.1 NADP-specific glutamate dehydrogenase -
  J6M13_RS04155 (J6M13_04160) dprA 893964..895067 (-) 1104 WP_004918085.1 DNA-processing protein DprA Machinery gene
  J6M13_RS04160 (J6M13_04165) - 895070..895447 (-) 378 WP_004918086.1 group III truncated hemoglobin -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25339.46 Da        Isoelectric Point: 9.4150

>NTDB_id=480973 J6M13_RS04130 WP_004918078.1 890159..890812(-) (comF) [Riemerella anatipestifer strain 20190403E1-1]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=480973 J6M13_RS04130 WP_004918078.1 890159..890812(-) (comF) [Riemerella anatipestifer strain 20190403E1-1]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(163-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4TBT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

100

100

1