Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   J5X95_RS18035 Genome accession   NZ_CP072120
Coordinates   3625990..3626181 (+) Length   63 a.a.
NCBI ID   WP_160223069.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3620990..3631181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS18005 (J5X95_18005) glnA 3621144..3622478 (+) 1335 WP_007410365.1 type I glutamate--ammonia ligase -
  J5X95_RS18010 (J5X95_18010) - 3622876..3623139 (+) 264 Protein_3510 peptidoglycan-binding domain-containing protein -
  J5X95_RS18015 (J5X95_18015) - 3623258..3623674 (+) 417 WP_059366952.1 hypothetical protein -
  J5X95_RS18020 (J5X95_18020) - 3623730..3624011 (-) 282 WP_059366950.1 hypothetical protein -
  J5X95_RS18025 (J5X95_18025) - 3624037..3624390 (-) 354 WP_079978832.1 hypothetical protein -
  J5X95_RS18030 (J5X95_18030) - 3624501..3625710 (-) 1210 Protein_3514 ribonuclease YeeF family protein -
  J5X95_RS18035 (J5X95_18035) rapF 3625990..3626181 (+) 192 WP_160223069.1 hypothetical protein Regulator
  J5X95_RS18040 (J5X95_18040) - 3626493..3627095 (+) 603 WP_059366946.1 tetratricopeptide repeat protein -
  J5X95_RS18045 (J5X95_18045) - 3627831..3628925 (-) 1095 WP_100001454.1 L-dopachrome tautomerase-related protein -
  J5X95_RS18050 (J5X95_18050) - 3629491..3630882 (+) 1392 WP_039063141.1 MFS transporter -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7582.65 Da        Isoelectric Point: 4.1317

>NTDB_id=480826 J5X95_RS18035 WP_160223069.1 3625990..3626181(+) (rapF) [Bacillus amyloliquefaciens strain GKT04]
MSKLASERVANILNDWYIAIKQQDAESAEKYFEEIKPLLDEMEEDQEVLMYYSLLEERHKMLL

Nucleotide


Download         Length: 192 bp        

>NTDB_id=480826 J5X95_RS18035 WP_160223069.1 3625990..3626181(+) (rapF) [Bacillus amyloliquefaciens strain GKT04]
ATGAGTAAACTGGCTTCTGAAAGAGTTGCAAATATATTAAATGATTGGTATATCGCGATAAAACAACAAGACGCTGAGTC
TGCTGAGAAATATTTTGAAGAGATCAAACCACTTTTAGATGAAATGGAAGAGGATCAAGAGGTTTTAATGTATTATTCTC
TGCTGGAAGAAAGGCATAAAATGCTTTTGTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(3-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

41.667

95.238

0.397