Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J5Z97_RS08295 Genome accession   NZ_CP072112
Coordinates   1658426..1659694 (+) Length   422 a.a.
NCBI ID   WP_011285735.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M08500     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1653426..1664694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Z97_RS08270 (J5Z97_08270) - 1653594..1654343 (-) 750 WP_063662417.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  J5Z97_RS08275 (J5Z97_08275) prmA 1654343..1655296 (-) 954 WP_014635734.1 50S ribosomal protein L11 methyltransferase -
  J5Z97_RS08280 (J5Z97_08280) - 1655367..1655837 (-) 471 WP_002987990.1 DUF3013 family protein -
  J5Z97_RS08285 (J5Z97_08285) pabB 1656037..1657794 (+) 1758 WP_023611170.1 aminodeoxychorismate synthase component I -
  J5Z97_RS08290 (J5Z97_08290) - 1657827..1658393 (+) 567 WP_208769264.1 aminodeoxychorismate/anthranilate synthase component II -
  J5Z97_RS08295 (J5Z97_08295) rarA 1658426..1659694 (+) 1269 WP_011285735.1 replication-associated recombination protein A Machinery gene
  J5Z97_RS08310 (J5Z97_08310) - 1660192..1660632 (+) 441 WP_011018265.1 GNAT family N-acetyltransferase -
  J5Z97_RS08315 (J5Z97_08315) - 1660687..1661193 (+) 507 WP_011529046.1 DNA topology modulation protein -
  J5Z97_RS08320 (J5Z97_08320) - 1661442..1662134 (+) 693 WP_023611251.1 exotoxin beta-grasp domain-containing protein -
  J5Z97_RS08325 (J5Z97_08325) - 1662460..1662684 (-) 225 WP_023611212.1 hypothetical protein -
  J5Z97_RS08330 (J5Z97_08330) - 1662863..1664491 (+) 1629 WP_023611188.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46615.04 Da        Isoelectric Point: 6.3774

>NTDB_id=480581 J5Z97_RS08295 WP_011285735.1 1658426..1659694(+) (rarA) [Streptococcus pyogenes strain M08500]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=480581 J5Z97_RS08295 WP_011285735.1 1658426..1659694(+) (rarA) [Streptococcus pyogenes strain M08500]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAACGGCACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCAAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.952

98.815

0.592