Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IAR44_RS08220 Genome accession   NZ_CP061087
Coordinates   1660922..1661701 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain CLA178     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1655922..1666701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAR44_RS08200 (IAR44_08200) trmFO 1656609..1657916 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IAR44_RS08205 (IAR44_08205) xerC 1657986..1658903 (+) 918 WP_039251511.1 tyrosine recombinase XerC -
  IAR44_RS08210 (IAR44_08210) hslV 1658919..1659464 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  IAR44_RS08215 (IAR44_08215) hslU 1659481..1660884 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  IAR44_RS08220 (IAR44_08220) codY 1660922..1661701 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IAR44_RS08225 (IAR44_08225) flgB 1662055..1662444 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  IAR44_RS08230 (IAR44_08230) flgC 1662444..1662896 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  IAR44_RS08235 (IAR44_08235) fliE 1662907..1663227 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  IAR44_RS08240 (IAR44_08240) fliF 1663270..1664880 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  IAR44_RS08245 (IAR44_08245) fliG 1664893..1665909 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  IAR44_RS08250 (IAR44_08250) fliH 1665902..1666657 (+) 756 WP_060675466.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=480544 IAR44_RS08220 WP_003154263.1 1660922..1661701(+) (codY) [Bacillus velezensis strain CLA178]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=480544 IAR44_RS08220 WP_003154263.1 1660922..1661701(+) (codY) [Bacillus velezensis strain CLA178]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471