Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   J5D23_RS04725 Genome accession   NZ_CP071987
Coordinates   1016510..1016770 (+) Length   86 a.a.
NCBI ID   WP_033756318.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5136     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1011510..1021770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D23_RS04700 (J5D23_04700) - 1011712..1011852 (-) 141 WP_000093203.1 hypothetical protein -
  J5D23_RS04705 (J5D23_04705) - 1011901..1012725 (-) 825 WP_000343420.1 mechanosensitive ion channel family protein -
  J5D23_RS04710 (J5D23_04710) - 1013520..1014284 (+) 765 WP_077368242.1 hypothetical protein -
  J5D23_RS04715 (J5D23_04715) - 1014296..1016217 (+) 1922 Protein_929 toprim domain-containing protein -
  J5D23_RS04720 (J5D23_04720) - 1016207..1016509 (+) 303 WP_000649851.1 TrbC/VirB2 family protein -
  J5D23_RS04725 (J5D23_04725) comB3 1016510..1016770 (+) 261 WP_033756318.1 hypothetical protein Machinery gene
  J5D23_RS04730 (J5D23_04730) - 1016783..1019282 (+) 2500 Protein_932 VirB4 family type IV secretion system protein -
  J5D23_RS04735 (J5D23_04735) - 1019275..1021208 (+) 1934 Protein_933 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10172.07 Da        Isoelectric Point: 4.6082

>NTDB_id=480411 J5D23_RS04725 WP_033756318.1 1016510..1016770(+) (comB3) [Helicobacter pylori strain MT5136]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGMVLLVALVTMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=480411 J5D23_RS04725 WP_033756318.1 1016510..1016770(+) (comB3) [Helicobacter pylori strain MT5136]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
CTGGATAATTTCTTTTTTGAGCGCTTCTTTCTTGTTTGTGTGGTCTTTATTGTATGGCATGGTGCTATTGGTAGCATTGG
TAACAATGTTTTACATATTAGAATTTTTTGATGAAGATATTACAAACATTATCTTAGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453