Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J5D23_RS02050 Genome accession   NZ_CP071987
Coordinates   421971..423146 (-) Length   391 a.a.
NCBI ID   WP_209614171.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5136     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 416971..428146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D23_RS02015 (J5D23_02015) - 417296..417610 (+) 315 WP_077367948.1 hypothetical protein -
  J5D23_RS02020 (J5D23_02020) - 417588..418355 (+) 768 WP_209614168.1 RNA polymerase sigma factor FliA -
  J5D23_RS02025 (J5D23_02025) fliM 418348..419412 (+) 1065 WP_000763588.1 flagellar motor switch protein FliM -
  J5D23_RS02030 (J5D23_02030) fliY 419416..420279 (+) 864 WP_077367950.1 flagellar motor switch protein FliY -
  J5D23_RS02035 (J5D23_02035) - 420308..420844 (+) 537 WP_209614169.1 YhcH/YjgK/YiaL family protein -
  J5D23_RS02040 (J5D23_02040) - 420841..421338 (+) 498 WP_209614170.1 DUF2147 domain-containing protein -
  J5D23_RS02045 (J5D23_02045) fur 421359..421811 (-) 453 WP_000824998.1 ferric iron uptake transcriptional regulator -
  J5D23_RS02050 (J5D23_02050) rarA 421971..423146 (-) 1176 WP_209614171.1 replication-associated recombination protein A Machinery gene
  J5D23_RS02055 (J5D23_02055) - 423143..423514 (-) 372 WP_000272469.1 helix-turn-helix transcriptional regulator -
  J5D23_RS02060 (J5D23_02060) - 423524..424390 (-) 867 WP_000045834.1 DnaJ family protein -
  J5D23_RS02065 (J5D23_02065) - 424558..425808 (+) 1251 WP_209614172.1 hypothetical protein -
  J5D23_RS02070 (J5D23_02070) - 425912..426778 (-) 867 WP_209614357.1 5'-3' exonuclease -
  J5D23_RS02075 (J5D23_02075) - 427002..427898 (-) 897 WP_209614173.1 response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43843.41 Da        Isoelectric Point: 8.5302

>NTDB_id=480401 J5D23_RS02050 WP_209614171.1 421971..423146(-) (rarA) [Helicobacter pylori strain MT5136]
MSLTALLNPTSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMQKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCDK
ALTLLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNNGSYSNDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=480401 J5D23_RS02050 WP_209614171.1 421971..423146(-) (rarA) [Helicobacter pylori strain MT5136]
ATGAGCCTGACTGCACTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAACATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTCATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
GGAATTCTTACTCCCCATTATGCAAAAAGATCACGCTTTAATCTTAGGAGCTAGCACGCAAGATCCTAATTACAGTCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCTTAAACAAGAGCGATTTGGACAGGCTTTGCGATAAG
GCTTTAACATTACTCAAAAAACAAATAGAGCCTGACGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACCCTACAATCCTTACGGCCCCATA
GCCTAAATAACGGATCTTACAGCAATGATACGCATTATAACCTCACTAGCGCGCTCATTAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTAGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCTAAATCCAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAGGGCTTGCTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATCTAGAAAAACCCCTCAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.864

100

0.399