Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J5D26_RS02080 Genome accession   NZ_CP071985
Coordinates   425328..426503 (-) Length   391 a.a.
NCBI ID   WP_209508979.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5119     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 420328..431503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D26_RS02045 (J5D26_02045) - 420646..420960 (+) 315 WP_001265943.1 hypothetical protein -
  J5D26_RS02050 (J5D26_02050) - 420938..421705 (+) 768 WP_000602339.1 RNA polymerase sigma factor FliA -
  J5D26_RS02055 (J5D26_02055) fliM 421698..422762 (+) 1065 WP_209508976.1 flagellar motor switch protein FliM -
  J5D26_RS02060 (J5D26_02060) fliY 422766..423629 (+) 864 WP_209508977.1 flagellar motor switch protein FliY -
  J5D26_RS02065 (J5D26_02065) - 423659..424195 (+) 537 WP_209508978.1 YhcH/YjgK/YiaL family protein -
  J5D26_RS02070 (J5D26_02070) - 424192..424695 (+) 504 WP_077652644.1 DUF2147 domain-containing protein -
  J5D26_RS02075 (J5D26_02075) fur 424716..425168 (-) 453 WP_128026706.1 ferric iron uptake transcriptional regulator -
  J5D26_RS02080 (J5D26_02080) rarA 425328..426503 (-) 1176 WP_209508979.1 replication-associated recombination protein A Machinery gene
  J5D26_RS02085 (J5D26_02085) - 426500..426871 (-) 372 WP_209508980.1 helix-turn-helix transcriptional regulator -
  J5D26_RS02090 (J5D26_02090) - 426881..427747 (-) 867 WP_209508981.1 DnaJ C-terminal domain-containing protein -
  J5D26_RS02095 (J5D26_02095) - 427915..429165 (+) 1251 WP_209508982.1 hypothetical protein -
  J5D26_RS02100 (J5D26_02100) - 429284..430120 (-) 837 WP_209508983.1 5'-3' exonuclease -
  J5D26_RS02105 (J5D26_02105) - 430375..431271 (-) 897 WP_001928027.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43808.47 Da        Isoelectric Point: 7.9823

>NTDB_id=480327 J5D26_RS02080 WP_209508979.1 425328..426503(-) (rarA) [Helicobacter pylori strain MT5119]
MSLTALLNPTSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILSFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCDK
ALTLLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVKKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=480327 J5D26_RS02080 WP_209508979.1 425328..426503(-) (rarA) [Helicobacter pylori strain MT5119]
ATGAGCCTGACTGCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTGCATGCTAGAGCGCCCCATTCTTTCATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAAATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGATAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGACGCTAAAACTTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTACAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCAATCAATCAAGCTTTGGATTGTGTTAAAAAGGGCTTACTCTACCCTATTCCTAAACACCTATTGCCTAACGCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-118)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389