Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J5D27_RS02040 Genome accession   NZ_CP071981
Coordinates   422616..423791 (-) Length   391 a.a.
NCBI ID   WP_209526247.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5111     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 417616..428791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D27_RS02005 (J5D27_02005) - 417941..418255 (+) 315 WP_001265943.1 hypothetical protein -
  J5D27_RS02010 (J5D27_02010) - 418233..419000 (+) 768 WP_033743377.1 RNA polymerase sigma factor FliA -
  J5D27_RS02015 (J5D27_02015) fliM 418993..420057 (+) 1065 WP_000763586.1 flagellar motor switch protein FliM -
  J5D27_RS02020 (J5D27_02020) fliY 420061..420918 (+) 858 WP_097708148.1 flagellar motor switch protein FliY -
  J5D27_RS02025 (J5D27_02025) - 420947..421483 (+) 537 WP_097708147.1 YhcH/YjgK/YiaL family protein -
  J5D27_RS02030 (J5D27_02030) - 421480..421983 (+) 504 WP_000780234.1 DUF2147 domain-containing protein -
  J5D27_RS02035 (J5D27_02035) fur 422004..422456 (-) 453 WP_001253271.1 ferric iron uptake transcriptional regulator -
  J5D27_RS02040 (J5D27_02040) rarA 422616..423791 (-) 1176 WP_209526247.1 replication-associated recombination protein A Machinery gene
  J5D27_RS02045 (J5D27_02045) - 423788..424159 (-) 372 WP_000272470.1 helix-turn-helix transcriptional regulator -
  J5D27_RS02050 (J5D27_02050) - 424169..425035 (-) 867 WP_209526249.1 DnaJ C-terminal domain-containing protein -
  J5D27_RS02055 (J5D27_02055) - 425203..426453 (+) 1251 WP_209526251.1 hypothetical protein -
  J5D27_RS02060 (J5D27_02060) - 426693..427559 (-) 867 WP_209526616.1 5'-3' exonuclease -
  J5D27_RS02065 (J5D27_02065) - 427788..428684 (-) 897 WP_000697524.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43819.48 Da        Isoelectric Point: 8.2999

>NTDB_id=480201 J5D27_RS02040 WP_209526247.1 422616..423791(-) (rarA) [Helicobacter pylori strain MT5111]
MSLTSLLNPTSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCDK
ALALLKKQMEPDAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
KAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=480201 J5D27_RS02040 WP_209526247.1 422616..423791(-) (rarA) [Helicobacter pylori strain MT5111]
ATGAGCCTGACTTCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTGTTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
GGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTGATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCTTAAACAAGAGCGATTTGGACAAGCTTTGCGATAAG
GCTTTAGCATTGTTAAAAAAACAAATGGAGCCTGACGCTAAAACCTATCTTTTGAATAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACGCTCAAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATTTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCACGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCTAAATCCAACACAGCTTAT
AAAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAGGGCTTGCTCTACCCTATTCCTAAACACTTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATCTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.26

100

0.396