Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J5D24_RS02060 Genome accession   NZ_CP071978
Coordinates   425383..426558 (-) Length   391 a.a.
NCBI ID   WP_097708145.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 420383..431558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D24_RS02025 (J5D24_02025) - 420708..421022 (+) 315 WP_001265943.1 hypothetical protein -
  J5D24_RS02030 (J5D24_02030) - 421000..421767 (+) 768 WP_097708149.1 RNA polymerase sigma factor FliA -
  J5D24_RS02035 (J5D24_02035) fliM 421760..422824 (+) 1065 WP_000763586.1 flagellar motor switch protein FliM -
  J5D24_RS02040 (J5D24_02040) fliY 422828..423685 (+) 858 WP_097708148.1 flagellar motor switch protein FliY -
  J5D24_RS02045 (J5D24_02045) - 423714..424250 (+) 537 WP_097708147.1 YhcH/YjgK/YiaL family protein -
  J5D24_RS02050 (J5D24_02050) - 424247..424750 (+) 504 WP_000780234.1 DUF2147 domain-containing protein -
  J5D24_RS02055 (J5D24_02055) fur 424771..425223 (-) 453 WP_001253271.1 ferric iron uptake transcriptional regulator -
  J5D24_RS02060 (J5D24_02060) rarA 425383..426558 (-) 1176 WP_097708145.1 replication-associated recombination protein A Machinery gene
  J5D24_RS02065 (J5D24_02065) - 426555..426926 (-) 372 WP_000332999.1 helix-turn-helix transcriptional regulator -
  J5D24_RS02070 (J5D24_02070) - 426936..427802 (-) 867 WP_097708144.1 DnaJ C-terminal domain-containing protein -
  J5D24_RS02075 (J5D24_02075) - 427970..429220 (+) 1251 WP_097708143.1 hypothetical protein -
  J5D24_RS02080 (J5D24_02080) - 429460..430326 (-) 867 WP_097708142.1 5'-3' exonuclease -
  J5D24_RS02085 (J5D24_02085) - 430553..431449 (-) 897 WP_209508043.1 response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43846.55 Da        Isoelectric Point: 8.5256

>NTDB_id=480158 J5D24_RS02060 WP_097708145.1 425383..426558(-) (rarA) [Helicobacter pylori strain MT5125]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCDK
ALALLKKQMEPDAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
KAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=480158 J5D24_RS02060 WP_097708145.1 425383..426558(-) (rarA) [Helicobacter pylori strain MT5125]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTAG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTGTTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
GGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTGATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCTTAAACAAGAGCGATTTGGACAAGCTTTGCGATAAG
GCTTTAGCATTGTTAAAAAAACAAATGGAGCCTGACGCTAAAACCTATCTTTTGAATAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACGCTCAAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATTTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCACGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCTAAATCCAACACAGCTTAT
AAAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAGGGCTTGCTCTACCCTATTCCTAAACACTTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATCTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.019

100

0.394