Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J5D22_RS02035 Genome accession   NZ_CP071977
Coordinates   424038..425213 (-) Length   391 a.a.
NCBI ID   WP_209506224.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 419038..430213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D22_RS02000 (J5D22_02000) - 419372..419686 (+) 315 WP_000868000.1 hypothetical protein -
  J5D22_RS02005 (J5D22_02005) - 419664..420431 (+) 768 WP_209506220.1 RNA polymerase sigma factor FliA -
  J5D22_RS02010 (J5D22_02010) fliM 420424..421488 (+) 1065 WP_000763586.1 flagellar motor switch protein FliM -
  J5D22_RS02015 (J5D22_02015) fliY 421492..422349 (+) 858 WP_187914146.1 flagellar motor switch protein FliY -
  J5D22_RS02020 (J5D22_02020) - 422376..422912 (+) 537 WP_209506222.1 YhcH/YjgK/YiaL family protein -
  J5D22_RS02025 (J5D22_02025) - 422909..423406 (+) 498 WP_000780260.1 DUF2147 domain-containing protein -
  J5D22_RS02030 (J5D22_02030) fur 423426..423878 (-) 453 WP_000824996.1 ferric iron uptake transcriptional regulator -
  J5D22_RS02035 (J5D22_02035) rarA 424038..425213 (-) 1176 WP_209506224.1 replication-associated recombination protein A Machinery gene
  J5D22_RS02040 (J5D22_02040) - 425210..425581 (-) 372 WP_000272469.1 helix-turn-helix transcriptional regulator -
  J5D22_RS02045 (J5D22_02045) - 425591..426457 (-) 867 WP_021186699.1 DnaJ family protein -
  J5D22_RS02050 (J5D22_02050) - 426625..427875 (+) 1251 WP_001199525.1 hypothetical protein -
  J5D22_RS02055 (J5D22_02055) - 427970..428836 (-) 867 WP_209506557.1 5'-3' exonuclease -
  J5D22_RS02060 (J5D22_02060) - 429058..429954 (-) 897 WP_209506226.1 response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43915.53 Da        Isoelectric Point: 8.3051

>NTDB_id=480117 J5D22_RS02035 WP_209506224.1 424038..425213(-) (rarA) [Helicobacter pylori strain MT5105]
MSLTALLNPTSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCDK
ALTLLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLTSSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPHSKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=480117 J5D22_RS02035 WP_209506224.1 424038..425213(-) (rarA) [Helicobacter pylori strain MT5105]
ATGAGCCTGACTGCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAACATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTTTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
GGAATTTTTACTCCCCATTATGGAAAAAAATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCTTAAATAAGAGCGATTTAGACAAACTTTGCGATAAG
GCTTTAACATTACTCAAAAAACAAATAGAGCCTGACGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTGAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCTTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGTGATGATACGCATTATAACCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAACCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGTTGCCTCATTCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-118)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391