Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J4T92_RS02070 Genome accession   NZ_CP071975
Coordinates   425429..426604 (-) Length   391 a.a.
NCBI ID   WP_209553229.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 420429..431604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4T92_RS02035 (J4T92_02035) - 420754..421068 (+) 315 WP_001265943.1 hypothetical protein -
  J4T92_RS02040 (J4T92_02040) - 421046..421813 (+) 768 WP_120833988.1 RNA polymerase sigma factor FliA -
  J4T92_RS02045 (J4T92_02045) fliM 421806..422870 (+) 1065 WP_000763562.1 flagellar motor switch protein FliM -
  J4T92_RS02050 (J4T92_02050) fliY 422874..423737 (+) 864 WP_097568330.1 flagellar motor switch protein FliY -
  J4T92_RS02055 (J4T92_02055) - 423766..424302 (+) 537 WP_209553228.1 YhcH/YjgK/YiaL family protein -
  J4T92_RS02060 (J4T92_02060) - 424299..424796 (+) 498 WP_000780296.1 DUF2147 domain-containing protein -
  J4T92_RS02065 (J4T92_02065) fur 424817..425269 (-) 453 WP_001253271.1 ferric iron uptake transcriptional regulator -
  J4T92_RS02070 (J4T92_02070) rarA 425429..426604 (-) 1176 WP_209553229.1 replication-associated recombination protein A Machinery gene
  J4T92_RS02075 (J4T92_02075) - 426601..426972 (-) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  J4T92_RS02080 (J4T92_02080) - 426982..427848 (-) 867 WP_209553230.1 DnaJ C-terminal domain-containing protein -
  J4T92_RS02085 (J4T92_02085) - 428016..429266 (+) 1251 WP_209553231.1 hypothetical protein -
  J4T92_RS02090 (J4T92_02090) - 429361..430197 (-) 837 WP_209553232.1 5'-3' exonuclease -
  J4T92_RS02095 (J4T92_02095) - 430450..431346 (-) 897 WP_156571148.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43749.35 Da        Isoelectric Point: 8.2175

>NTDB_id=480078 J4T92_RS02070 WP_209553229.1 425429..426604(-) (rarA) [Helicobacter pylori strain MT5118]
MSLTALLNPTSLEDFLGQEHLIGKDTPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLECPILSFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAK
ALALLKKQIEPDAKTYLLNNSTGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
KAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=480078 J4T92_RS02070 WP_209553229.1 425429..426604(-) (rarA) [Helicobacter pylori strain MT5118]
ATGAGCCTGACTGCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACACCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGTGCCCTATCCTTTCATTTAATGCGACGGATTTCAAATTAGAAGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
GGAATTTTTACTCCCCATTATGGAAAAAAATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAATAAGAGCGATTTAGACAGGCTTTGCGCTAAG
GCTTTAGCATTGTTAAAAAAACAAATAGAGCCTGACGCTAAAACCTATCTTTTAAACAACAGCACTGGCGATGCCAGAGC
GTTATTAAATCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCCTACAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTACAGCGATGATACGCATTATAATCTCACTAGCGCGCTCATTAAATCTTTAAGAGGGAGCGAT
GAAAACGCCTCCATTTATTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCTAAATCCAACACGGCTTAT
AAAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAGGGCTTACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-118)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.621

100

0.396