Detailed information NTG0479823

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: IBC03_RS05535
• Genome accession: NZ_CP061025
• Coordinates: 1060089..1060970 (-)
• Length: 293 a.a.
• NCBI ID: WP_138496683.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 13496
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1055089..1065970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBC03_RS05510 (IBC03_05520)	vicR	1055781..1056488 (-)	708	WP_011681206.1	response regulator YycF	Regulator
IBC03_RS05515 (IBC03_05525)	-	1057027..1057794 (+)	768	WP_011681207.1	amino acid ABC transporter ATP-binding protein	-
IBC03_RS05520 (IBC03_05530)	-	1057806..1058639 (+)	834	WP_011681208.1	transporter substrate-binding domain-containing protein	-
IBC03_RS05525 (IBC03_05535)	-	1058657..1059355 (+)	699	WP_011681209.1	amino acid ABC transporter permease	-
IBC03_RS05530 (IBC03_05540)	-	1059367..1060017 (+)	651	WP_011226088.1	amino acid ABC transporter permease	-
IBC03_RS05535 (IBC03_05545)	endA	1060089..1060970 (-)	882	WP_138496683.1	DNA/RNA non-specific endonuclease	Machinery gene
IBC03_RS05540 (IBC03_05550)	-	1061032..1061220 (-)	189	WP_011226090.1	DNA-directed RNA polymerase subunit beta	-
IBC03_RS05545 (IBC03_05555)	murA	1061222..1062493 (-)	1272	WP_138496682.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
IBC03_RS05550 (IBC03_05560)	-	1062563..1062799 (-)	237	WP_002946959.1	DUF1146 family protein	-
IBC03_RS05555 (IBC03_05565)	galE	1062987..1064000 (-)	1014	WP_011681212.1	UDP-glucose 4-epimerase GalE	-
IBC03_RS05560 (IBC03_05570)	-	1064015..1064470 (-)	456	WP_024009932.1	DUF4832 domain-containing protein	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31774.44 Da
• Isoelectric Point: 10.0477

>NTDB_id=479823 IBC03_RS05535 WP_138496683.1 1060089..1060970(-) (endA) [Streptococcus thermophilus strain 13496]
MAKRKTSLTNKQKRQLVTLIIAALIAVLGYLGTSNKLSPDNPIRQVASLVSGKSNKSIKSNGSTNSQSTPQEQLAETVMT
SSVKSQLGNSLEWNGAGAYIINRNKTNLNAKVSSQPYANNQVKTVQGQTVPTVANALLSEATRQYKNRQETGNGSTSWTP
AGWHQVQNLSGEYSHAVDRGHLLGYALIGGLKGFDASTSNPENIAVQTAWANQAYSDSSTGQNYYESLVRKALDKNKRVR
YRVTLIYEGENLIPSGTHLEAKSADGSLEFNVFVPNVQEGITLDYYSGKVTVN

Nucleotide

• Length: 882 bp

>NTDB_id=479823 IBC03_RS05535 WP_138496683.1 1060089..1060970(-) (endA) [Streptococcus thermophilus strain 13496]
ATGGCAAAAAGAAAGACATCTTTGACAAATAAACAGAAACGTCAGTTAGTCACATTAATAATAGCAGCTTTGATAGCTGT
TTTAGGTTACCTAGGAACCAGTAACAAGCTCTCGCCTGATAATCCTATCAGACAAGTAGCAAGCCTAGTTTCAGGGAAAT
CTAACAAATCCATTAAATCTAATGGTTCAACAAATAGTCAGTCTACACCACAAGAGCAGCTTGCTGAGACAGTAATGACT
AGTTCAGTCAAAAGCCAACTGGGTAATTCCTTAGAATGGAATGGAGCTGGGGCCTACATTATTAATAGAAATAAGACGAA
TCTAAATGCTAAGGTATCAAGCCAACCCTATGCTAATAACCAAGTCAAAACGGTTCAAGGACAAACTGTTCCTACAGTTG
CTAATGCCTTATTAAGTGAAGCAACTAGACAGTACAAAAATCGTCAAGAAACAGGGAATGGTTCAACCTCTTGGACACCA
GCTGGATGGCACCAGGTTCAAAATTTATCAGGAGAGTATAGCCATGCCGTAGATAGAGGCCATTTGCTAGGTTATGCACT
GATAGGTGGTTTGAAAGGATTTGATGCCTCGACTTCAAATCCAGAGAATATTGCTGTTCAAACTGCTTGGGCAAATCAAG
CATATAGCGATAGTTCTACAGGCCAAAACTATTATGAAAGCCTAGTACGAAAAGCTCTGGATAAAAACAAACGTGTTCGT
TATCGTGTGACCCTGATTTATGAAGGAGAGAATCTCATTCCATCAGGAACACATCTTGAAGCTAAGTCAGCAGACGGCTC
ACTTGAGTTTAATGTCTTTGTTCCAAATGTACAAGAGGGAATTACACTAGATTACTATTCAGGAAAAGTAACGGTGAATT
GA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (101-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	72.385	81.57	0.59
endA	Streptococcus pneumoniae D39	72.385	81.57	0.59
endA	Streptococcus pneumoniae R6	72.385	81.57	0.59
endA	Streptococcus pneumoniae TIGR4	72.385	81.57	0.59