Detailed information NTG0479717

Bioinformatically predicted

Overview

• Name: comB4
• Type: Machinery gene
• Locus tag: J5F39_RS07505
• Genome accession: NZ_CP071936
• Coordinates: 1553320..1555884 (-)
• Length: 854 a.a.
• NCBI ID: WP_283491884.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MTT03
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1548320..1560884

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5F39_RS07485	comB10	1549192..1550391 (-)	1200	WP_283491881.1	DNA type IV secretion system protein ComB10	Machinery gene
J5F39_RS07490	-	1550388..1552028 (-)	1641	WP_283491882.1	TrbG/VirB9 family P-type conjugative transfer protein	-
J5F39_RS07495	-	1552025..1553191 (-)	1167	WP_283491883.1	VirB8/TrbF family protein	-
J5F39_RS07500	-	1553184..1553318 (-)	135	WP_000723782.1	hypothetical protein	-
J5F39_RS07505	comB4	1553320..1555884 (-)	2565	WP_283491884.1	VirB4 family type IV secretion/conjugal transfer ATPase	Machinery gene
J5F39_RS07510	-	1555884..1556120 (-)	237	WP_283491885.1	hypothetical protein	-
J5F39_RS07515	comB3	1556132..1556395 (-)	264	WP_283491886.1	competence protein ComB	Machinery gene
J5F39_RS07520	comB2	1556405..1556695 (-)	291	WP_283491887.1	TrbC/VirB2 family protein	Machinery gene
J5F39_RS07525	-	1556692..1557171 (-)	480	WP_283491888.1	hypothetical protein	-
J5F39_RS07530	-	1557168..1557392 (-)	225	WP_000188957.1	hypothetical protein	-
J5F39_RS07535	-	1557395..1558183 (-)	789	WP_283491889.1	integrase	-
J5F39_RS07540	-	1558275..1559345 (+)	1071	WP_283491890.1	transposase	-
J5F39_RS07545	-	1559424..1560404 (+)	981	Protein_1479	hypothetical protein	-

Sequence

Protein

• Length: 854 a.a.
• Molecular weight: 98262.20 Da
• Isoelectric Point: 8.4334

>NTDB_id=479717 J5F39_RS07505 WP_283491884.1 1553320..1555884(-) (comB4) [Helicobacter pylori strain MTT03]
MLENAFKYCKEKAIELLTGFVPKTYSMAEECNILGLYDDTFIITKQENLVAIMSLQGLSYSNLMQKDLEGYFDTRQNVLN
TISKDIQLRIVAKRRKEFINQSPNIDNPYAKAIITQFESKEIYKTEYFLVFESITSNVKSFFEKKKLEMTTSINEELEES
SKENENNSNETHSNTSSKKDKKNKFKKKTTFSATSKRALLIQTIERVKNALREFKPTLLNSKEVLNFYAEYINGKYIAFN
PKLKRLSDSYIASNVHFKKDYFVIEFQNQSTFCACVGIKNYESEEISSLPISTLLHTQIELDLIFHIRSLGQFESLNFLK
TKKKLTLSKMVKNDIDDYIELVQANRLSMQECALNLVIRANSKAKLDKSLKEILSLLNNAGLGSVTETIGLKPSYFSFFP
NNANINPRMRNQTSQVIASLILFEKNNTGFRANSWGDMPLSVFKNLDHSPYLFNFHNQEVKHKGVLAHNVARVVGHTMII
GATGAGKTTLISYLMMSALKYSNIDILALDRLNGLYSFTKYFDGIYNQGENFHINPFSLEDSATNRAFLLHFYAQMAKVD
SYDDHKDKVEDKTALINAIDTMYRNYNDEVKQAKFSNQELPLPFDLKEFVNTIVKTNTNILDSSFEDYLKSCLFSSRMDS
LDFKTRISTINTDSILHNDDDAGLLAYYVFHKMIDRALKINRGFLCFIDEFKSYAQNEMMNKKINEIITQARKANGVIVL
ALQDINQLSEVRNAQSFIKNMGQLILYPQRNIDTKDLNDKFGIRLSDTEKHFLENTAVNEYKVLLKNMNDGSSNIIDVSL
SSLGNYLQIFSSNSSMVEHIENLIKHYPTTWREVFVNNTYQKFDDKKHLEKVLA

Nucleotide

• Length: 2565 bp

>NTDB_id=479717 J5F39_RS07505 WP_283491884.1 1553320..1555884(-) (comB4) [Helicobacter pylori strain MTT03]
ATGCTAGAAAACGCTTTTAAATATTGCAAAGAGAAAGCCATAGAGCTTTTAACAGGTTTTGTGCCAAAAACCTATTCTAT
GGCAGAGGAATGCAATATTTTAGGCTTGTATGATGATACTTTTATTATCACCAAACAAGAAAATTTAGTCGCTATTATGT
CTTTACAAGGACTAAGTTATTCTAATTTAATGCAAAAAGATTTGGAGGGCTATTTTGATACAAGACAAAATGTTCTCAAT
ACCATTAGTAAGGACATTCAATTAAGGATTGTGGCTAAAAGGCGTAAAGAATTTATCAATCAAAGCCCCAACATTGACAA
CCCTTATGCCAAAGCCATTATCACACAATTTGAAAGCAAGGAAATCTATAAAACAGAATATTTTTTAGTGTTTGAGAGCA
TTACTTCTAATGTCAAATCTTTCTTTGAGAAAAAGAAATTAGAAATGACTACTTCAATCAATGAAGAATTAGAAGAAAGC
TCTAAAGAGAATGAAAATAACTCCAATGAGACCCATTCAAACACAAGCTCTAAAAAAGACAAGAAAAACAAGTTCAAAAA
AAAGACAACCTTTAGCGCCACAAGTAAAAGAGCCTTACTCATTCAAACCATAGAAAGAGTGAAAAACGCATTAAGAGAGT
TTAAACCCACTCTCTTAAATTCTAAAGAAGTGTTGAATTTCTATGCGGAGTATATCAATGGCAAATACATCGCCTTTAAT
CCTAAATTAAAGCGACTAAGCGATAGTTATATTGCTAGTAATGTGCATTTTAAAAAAGATTACTTTGTCATTGAATTTCA
AAATCAAAGCACCTTTTGTGCGTGTGTGGGTATTAAAAACTATGAGAGTGAAGAAATTTCTTCTCTCCCCATTTCTACCC
TTTTACACACGCAAATTGAATTAGATTTAATCTTTCATATCCGTTCATTAGGGCAGTTTGAAAGCTTGAATTTTCTAAAA
ACCAAGAAAAAACTCACGCTTTCTAAAATGGTGAAAAATGATATTGATGATTATATAGAATTGGTGCAAGCCAATCGTTT
GAGTATGCAAGAGTGTGCCTTAAACTTAGTTATAAGAGCTAATAGCAAAGCCAAATTAGACAAATCTTTAAAAGAGATTT
TATCCTTGCTTAATAACGCTGGACTAGGCAGTGTTACAGAAACCATAGGGCTAAAACCCTCTTATTTTTCATTCTTCCCT
AATAATGCAAACATTAACCCTAGAATGAGAAATCAAACTTCCCAAGTGATAGCCTCTTTAATCTTGTTTGAAAAAAATAA
TACAGGTTTTAGGGCAAATTCTTGGGGTGATATGCCTTTATCTGTGTTTAAGAACCTAGACCATAGCCCTTATTTGTTTA
ATTTTCATAATCAAGAAGTCAAACATAAAGGCGTGTTAGCCCACAATGTCGCACGAGTAGTGGGACATACGATGATTATA
GGAGCAACAGGAGCTGGTAAAACCACGCTCATTAGCTATTTAATGATGAGTGCTTTAAAATACTCTAACATTGATATTTT
AGCTCTTGATAGACTAAATGGTTTGTATTCCTTTACCAAGTATTTTGATGGGATTTATAATCAAGGCGAAAACTTTCATA
TCAACCCTTTTTCGTTAGAAGATAGTGCAACTAATAGAGCCTTTTTATTGCATTTTTATGCCCAAATGGCAAAAGTGGAT
AGCTATGATGACCATAAAGATAAAGTAGAAGATAAAACAGCCCTAATAAATGCTATTGATACTATGTATAGAAATTATAA
CGATGAAGTCAAACAAGCCAAATTTAGCAACCAAGAATTACCCCTTCCTTTTGATTTAAAAGAGTTTGTCAATACCATTG
TTAAAACTAATACAAACATTTTAGATAGTAGTTTTGAAGACTATTTAAAATCTTGCTTATTTTCTAGCCGAATGGATAGC
CTAGATTTTAAAACTCGCATTAGCACCATAAATACCGATAGCATTTTACACAATGATGATGACGCTGGGCTTTTAGCCTA
CTATGTGTTTCATAAGATGATTGATAGAGCCTTGAAAATCAATCGTGGTTTTTTATGCTTTATTGATGAATTTAAATCTT
ACGCACAAAATGAAATGATGAATAAAAAAATCAATGAAATCATTACTCAAGCTAGAAAGGCTAATGGGGTGATTGTTCTA
GCCTTACAAGACATTAACCAACTAAGCGAAGTGAGAAACGCTCAAAGCTTTATAAAAAATATGGGGCAATTGATTTTGTA
TCCCCAAAGAAATATTGATACCAAAGATTTAAACGATAAATTTGGCATTAGACTAAGCGATACAGAAAAACATTTTTTAG
AAAACACCGCCGTTAATGAATACAAAGTCTTACTCAAAAACATGAATGATGGCTCATCTAATATTATAGATGTGAGCCTT
AGCTCTTTGGGTAATTACTTACAAATCTTTAGCTCTAATTCTAGCATGGTAGAACACATTGAAAATCTCATTAAGCATTA
CCCTACTACTTGGAGAGAAGTCTTTGTCAATAACACCTATCAAAAATTTGATGATAAAAAACACTTAGAAAAAGTGCTTG
CCTAA

Domains

Predicted by InterProScan.

• FtsK/SpoIIIE family (FtsK_SpoIIIE) (433-501)

• CagE, TrbE, VirB family, component of type IV transporter system (CagE_TrbE_VirB) (210-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB4	Helicobacter pylori 26695	47.368	97.892	0.464