Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   IBB93_RS08875 Genome accession   NZ_CP061022
Coordinates   1718137..1719093 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain 24738     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1713137..1724093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB93_RS08845 (IBB93_08895) proC 1713697..1714467 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  IBB93_RS08850 (IBB93_08900) - 1714497..1715159 (-) 663 WP_011681679.1 type II CAAX endopeptidase family protein -
  IBB93_RS08855 (IBB93_08905) - 1715256..1715699 (-) 444 WP_011681680.1 hypothetical protein -
  IBB93_RS10380 - 1715773..1716198 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  IBB93_RS10385 - 1716155..1716430 (-) 276 WP_011681681.1 hypothetical protein -
  IBB93_RS08865 (IBB93_08915) - 1716442..1716639 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  IBB93_RS08870 (IBB93_08920) - 1716888..1718081 (-) 1194 WP_207567722.1 acetate kinase -
  IBB93_RS08875 (IBB93_08925) comYH 1718137..1719093 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  IBB93_RS08880 (IBB93_08930) comGG 1719138..1719455 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  IBB93_RS08885 (IBB93_08935) comYF 1719433..1719870 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  IBB93_RS08890 (IBB93_08940) comGE 1719854..1720147 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  IBB93_RS08895 (IBB93_08945) comYD 1720119..1720547 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  IBB93_RS08900 (IBB93_08950) comYC 1720507..1720833 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  IBB93_RS08905 (IBB93_08955) comYB 1720830..1721930 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  IBB93_RS08910 (IBB93_08960) comGA/cglA/cilD 1721812..1722753 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  IBB93_RS08915 (IBB93_08965) - 1722834..1723196 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=479668 IBB93_RS08875 WP_011226622.1 1718137..1719093(-) (comYH) [Streptococcus thermophilus strain 24738]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=479668 IBB93_RS08875 WP_011226622.1 1718137..1719093(-) (comYH) [Streptococcus thermophilus strain 24738]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682