Detailed information NTG0479633

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: J4A01_RS12645
• Genome accession: NZ_CP071932
• Coordinates: 2601438..2602706 (+)
• Length: 422 a.a.
• NCBI ID: WP_029326053.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain CAS02
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2596438..2607706

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4A01_RS12625 (J4A01_12515)	-	2597809..2598429 (-)	621	WP_087920803.1	tetratricopeptide repeat protein	-
J4A01_RS12630 (J4A01_12520)	mnmA	2598517..2599632 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
J4A01_RS12635 (J4A01_12525)	-	2599669..2600808 (-)	1140	WP_032873857.1	cysteine desulfurase family protein	-
J4A01_RS12640 (J4A01_12530)	cymR	2600827..2601243 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
J4A01_RS12645 (J4A01_12535)	rarA	2601438..2602706 (+)	1269	WP_029326053.1	replication-associated recombination protein A	Machinery gene
J4A01_RS12650 (J4A01_12540)	-	2602821..2603585 (-)	765	WP_032873855.1	tRNA threonylcarbamoyladenosine dehydratase	-
J4A01_RS12660 (J4A01_12550)	aspS	2603911..2605689 (-)	1779	WP_032873853.1	aspartate--tRNA ligase	-
J4A01_RS12665 (J4A01_12555)	hisS	2605704..2606978 (-)	1275	WP_032873851.1	histidine--tRNA ligase	-
J4A01_RS12670 (J4A01_12560)	-	2607335..2607505 (-)	171	WP_087920774.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46646.54 Da
• Isoelectric Point: 8.5446

>NTDB_id=479633 J4A01_RS12645 WP_029326053.1 2601438..2602706(+) (rarA) [Bacillus amyloliquefaciens strain CAS02]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALKR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTVRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=479633 J4A01_RS12645 WP_029326053.1 2601438..2602706(+) (rarA) [Bacillus amyloliquefaciens strain CAS02]
ATGAAACCACTGGCGTATCGGATGCGGCCTGCCAATATTGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACATCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGTACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGAAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCTTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGGGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGG
TCCGGATTACACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGAACGGGTAA
AATCGGCGATGTGCCGAAACATCTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAAAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905