Detailed information NTG0479592

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: IBB97_RS05530
• Genome accession: NZ_CP061021
• Coordinates: 1057974..1058855 (-)
• Length: 293 a.a.
• NCBI ID: WP_138496683.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 24739
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1052974..1063855

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBB97_RS05505 (IBB97_05510)	vicR	1053666..1054373 (-)	708	WP_011681206.1	response regulator YycF	Regulator
IBB97_RS05510 (IBB97_05515)	-	1054912..1055679 (+)	768	WP_011681207.1	amino acid ABC transporter ATP-binding protein	-
IBB97_RS05515 (IBB97_05520)	-	1055691..1056524 (+)	834	WP_011681208.1	transporter substrate-binding domain-containing protein	-
IBB97_RS05520 (IBB97_05525)	-	1056542..1057240 (+)	699	WP_011681209.1	amino acid ABC transporter permease	-
IBB97_RS05525 (IBB97_05530)	-	1057252..1057902 (+)	651	WP_011226088.1	amino acid ABC transporter permease	-
IBB97_RS05530 (IBB97_05535)	endA	1057974..1058855 (-)	882	WP_138496683.1	DNA/RNA non-specific endonuclease	Machinery gene
IBB97_RS05535 (IBB97_05540)	-	1058917..1059105 (-)	189	WP_011226090.1	DNA-directed RNA polymerase subunit beta	-
IBB97_RS05540 (IBB97_05545)	murA	1059107..1060378 (-)	1272	WP_138496682.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
IBB97_RS05545 (IBB97_05550)	-	1060448..1060684 (-)	237	WP_002946959.1	DUF1146 family protein	-
IBB97_RS05550 (IBB97_05555)	galE	1060872..1061885 (-)	1014	WP_011681212.1	UDP-glucose 4-epimerase GalE	-
IBB97_RS05555 (IBB97_05560)	-	1061900..1062355 (-)	456	WP_024009932.1	DUF4832 domain-containing protein	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31774.44 Da
• Isoelectric Point: 10.0477

>NTDB_id=479592 IBB97_RS05530 WP_138496683.1 1057974..1058855(-) (endA) [Streptococcus thermophilus strain 24739]
MAKRKTSLTNKQKRQLVTLIIAALIAVLGYLGTSNKLSPDNPIRQVASLVSGKSNKSIKSNGSTNSQSTPQEQLAETVMT
SSVKSQLGNSLEWNGAGAYIINRNKTNLNAKVSSQPYANNQVKTVQGQTVPTVANALLSEATRQYKNRQETGNGSTSWTP
AGWHQVQNLSGEYSHAVDRGHLLGYALIGGLKGFDASTSNPENIAVQTAWANQAYSDSSTGQNYYESLVRKALDKNKRVR
YRVTLIYEGENLIPSGTHLEAKSADGSLEFNVFVPNVQEGITLDYYSGKVTVN

Nucleotide

• Length: 882 bp

>NTDB_id=479592 IBB97_RS05530 WP_138496683.1 1057974..1058855(-) (endA) [Streptococcus thermophilus strain 24739]
ATGGCAAAAAGAAAGACATCTTTGACAAATAAACAGAAACGTCAGTTAGTCACATTAATAATAGCAGCTTTGATAGCTGT
TTTAGGTTACCTAGGAACCAGTAACAAGCTCTCGCCTGATAATCCTATCAGACAAGTAGCAAGCCTAGTTTCAGGGAAAT
CTAACAAATCCATTAAATCTAATGGTTCAACAAATAGTCAGTCTACACCACAAGAGCAGCTTGCTGAGACAGTAATGACT
AGTTCAGTCAAAAGCCAACTGGGTAATTCCTTAGAATGGAATGGAGCTGGGGCCTACATTATTAATAGAAATAAGACGAA
TCTAAATGCTAAGGTATCAAGCCAACCCTATGCTAATAACCAAGTCAAAACGGTTCAAGGACAAACTGTTCCTACAGTTG
CTAATGCCTTATTAAGTGAAGCAACTAGACAGTACAAAAATCGTCAAGAAACAGGGAATGGTTCAACCTCTTGGACACCA
GCTGGATGGCACCAGGTTCAAAATTTATCAGGAGAGTATAGCCATGCCGTAGATAGAGGCCATTTGCTAGGTTATGCACT
GATAGGTGGTTTGAAAGGATTTGATGCCTCGACTTCAAATCCAGAGAATATTGCTGTTCAAACTGCTTGGGCAAATCAAG
CATATAGCGATAGTTCTACAGGCCAAAACTATTATGAAAGCCTAGTACGAAAAGCTCTGGATAAAAACAAACGTGTTCGT
TATCGTGTGACCCTGATTTATGAAGGAGAGAATCTCATTCCATCAGGAACACATCTTGAAGCTAAGTCAGCAGACGGCTC
ACTTGAGTTTAATGTCTTTGTTCCAAATGTACAAGAGGGAATTACACTAGATTACTATTCAGGAAAAGTAACGGTGAATT
GA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (101-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	72.385	81.57	0.59
endA	Streptococcus pneumoniae D39	72.385	81.57	0.59
endA	Streptococcus pneumoniae R6	72.385	81.57	0.59
endA	Streptococcus pneumoniae TIGR4	72.385	81.57	0.59