Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   IBC08_RS10380 Genome accession   NZ_CP061019
Coordinates   1318723..1318893 (-) Length   56 a.a.
NCBI ID   WP_014608546.1    Uniprot ID   A0A2U2MH52
Organism   Streptococcus thermophilus strain 24853     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1317363..1322601 1318723..1318893 within 0


Gene organization within MGE regions


Location: 1317363..1322601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS06800 (IBC08_06780) - 1317363..1318510 (+) 1148 WP_095559415.1 IS3 family transposase -
  IBC08_RS06805 (IBC08_06785) - 1318548..1318732 (-) 185 Protein_1302 IS3 family transposase -
  IBC08_RS10380 (IBC08_06790) amiF 1318723..1318893 (-) 171 WP_014608546.1 hypothetical protein Regulator
  IBC08_RS06820 (IBC08_06800) - 1319121..1319481 (-) 361 Protein_1304 TatD family hydrolase -
  IBC08_RS06825 (IBC08_06805) - 1319997..1321202 (+) 1206 WP_011681420.1 OFA family MFS transporter -
  IBC08_RS06830 (IBC08_06810) - 1321249..1322601 (-) 1353 Protein_1306 IS3 family transposase -

Sequence

Protein


Download         Length: 56 a.a.        Molecular weight: 6495.42 Da        Isoelectric Point: 4.6436

>NTDB_id=479504 IBC08_RS10380 WP_014608546.1 1318723..1318893(-) (amiF) [Streptococcus thermophilus strain 24853]
MEVAETEELYNNPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMV

Nucleotide


Download         Length: 171 bp        

>NTDB_id=479504 IBC08_RS10380 WP_014608546.1 1318723..1318893(-) (amiF) [Streptococcus thermophilus strain 24853]
GTGGAAGTTGCTGAGACAGAAGAGCTCTACAACAATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTAT
TCCAGATCCAATCTTGGAACGTAAGAAAGTCTTGAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAG
AAATGGTATGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(1-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U2MH52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

98.214

100

0.982
  amiF Streptococcus thermophilus LMD-9

98.214

100

0.982
  amiF Streptococcus salivarius strain HSISS4

98.214

100

0.982