Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   IBC08_RS07560 Genome accession   NZ_CP061019
Coordinates   1464219..1464950 (-) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus strain 24853     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459219..1469950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS07535 (IBC08_07510) - 1460268..1461449 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  IBC08_RS07545 (IBC08_07520) trmB 1461685..1462326 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  IBC08_RS07550 (IBC08_07525) - 1462336..1463127 (-) 792 WP_002951667.1 phosphotransferase family protein -
  IBC08_RS07555 (IBC08_07530) pptB 1463185..1464222 (-) 1038 WP_179971023.1 ABC transporter permease Regulator
  IBC08_RS07560 (IBC08_07535) pptA 1464219..1464950 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  IBC08_RS07565 (IBC08_07540) - 1465015..1465434 (+) 420 WP_002951675.1 HIT family protein -
  IBC08_RS07570 (IBC08_07545) - 1465431..1465739 (+) 309 WP_179971427.1 hypothetical protein -
  IBC08_RS10075 - 1466291..1466461 (-) 171 WP_011226439.1 hypothetical protein -
  IBC08_RS07580 (IBC08_07555) - 1466531..1467166 (-) 636 WP_179971026.1 DUF4230 domain-containing protein -
  IBC08_RS10265 - 1467185..1467310 (-) 126 WP_011681534.1 hypothetical protein -
  IBC08_RS07585 (IBC08_07560) - 1467719..1469818 (-) 2100 WP_207563285.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=479488 IBC08_RS07560 WP_002951673.1 1464219..1464950(-) (pptA) [Streptococcus thermophilus strain 24853]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=479488 IBC08_RS07560 WP_002951673.1 1464219..1464950(-) (pptA) [Streptococcus thermophilus strain 24853]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971